Linked Applications
Loading…

Jalview

  • Dashboards
  • Projects
  • Issues
  • Give feedback to Atlassian
  • Help
    • Jira Core help
    • Keyboard Shortcuts
    • About Jira
    • Jira Credits
  • Log In
Welcome to the Jalview project's issue tracker.
If you experience any problems, please contact James (Jim) Procter.

Export - CSV (All fields)

Export - CSV (Current fields)

Comma (,) Semicolon (;) Vertical bar (|) Caret (^)

  1. Improvement JAL-4513
    Consistent colours assigned to groups generated when subdividing tree
  2. Improvement JAL-4484
    Temporarily configure 3d structure viewer via CLI for a jalview session
  3. Improvement JAL-4441
    optionally display source/provider for structure derived annotations along side the annotation label
  4. New Feature JAL-4326
    gui controls for configuring bitmap export preferences
  5. Bug JAL-4282
    ID width for imported project is affected by changes in font size in User preferences
  6. New Feature JAL-4274
    Configurable bitmap export preferences for height, width and scale factor
  7. New Feature JAL-4138
    user preferences and structure chooser controls for automatically showing PAE annotation row along side pLDDT when loading structure from alphafold, and control secondary structure and temp factor display
  8. New Feature JAL-4106
    Add user properties to control more/all AlignFrame components (esp. Text)
  9. Bug JAL-4020
    Pymol cannot be opened via Jalview if PymolWin.exe is the configured executable on Windows
  10. Bug JAL-3927
    Preferences dialog blocks the UI if the web service host is slow to response.
  11. Improvement JAL-3815
    default /etc/jalview_properties allowing debian package-conf to control defaults for new Jalview users
  12. Improvement JAL-3814
    user preference token controlling launch of the news browser (like -nonews argument)
  13. Improvement JAL-3813
    user preference token controlling download of linkout URLs from www.jalview.org/services/identifiers
  14. Improvement JAL-3812
    user preference token controlling download of BIOJSHTML templates
  15. Bug JAL-3633
    Allow/honour HTTPS proxy configuration for getdown and Jalview services
  16. New Feature JAL-3631
    Allow jalview auto-updates to download to and work from separate user-space directory
  17. New Feature JAL-3619
    Prompt user to install/update external viewer config or gracefully degrade when currently configured viewer is not available, or when importing projects with structure views
  18. Improvement JAL-3618
    Warn user if provided structure viewer location was not able to be used
  19. Improvement JAL-3617
    Extended Structure Preferences GUI for configuring multiple external viewers
  20. Bug JAL-3552
    Fonts too small in alignment, annotations and Preferences and tabs not appearing correctly in Ubuntu with 4k screen
  21. Improvement JAL-3538
    Enable font anti-aliasing as default setting
  22. Task JAL-3530
    All outside pings (e.g. telemetry and JABAWS/Slivka querying) will need to check existing Debian opt-in
  23. Improvement JAL-3503
    Add preference values and gui tab for changing the memory setting at launch
  24. Bug JAL-3473
    SpinnerNumberModel causing IllegalArgumentException in some circumstances
  25. Bug JAL-3124
    Protein structure derived annotation tracks not automatically shown when 'add to alignment' preference is enabled (and not available unless it *is* ticked!)
  26. Bug JAL-3013
    symlink to (e.g.) chimera not recognised as executable
  27. Bug JAL-3009
    Jalview unresponsive when starting up if local network connection is poor
  28. Improvement JAL-2995
    Make 'Input path' text fields easier to complete for novices
  29. Improvement JAL-2994
    Try harder to locate Chimera executable on windows platforms
  30. Improvement JAL-2942
    Apply consensus logo preferences to group consensus as well
  31. Task JAL-2919
    addProperties(String file...) to add fragments Jalview configuration
  32. Task JAL-2917
    verify compatibility and migrate jalview / compbio services to https
  33. Bug JAL-2913
    Fixed id width preference for image output is not respected
  34. Improvement JAL-2863
    Refactor File format suffix export preferences
  35. Bug JAL-2849
    Sequence limits included in FASTA output regardless of user preference setting
  36. Bug JAL-2756
    $SEQUENCE_ID$ warning appears on launch when no $SEQUENCE_ID$ setting has been configured
  37. Improvement JAL-2670
    change default visibility for autocalculated annotation rows
  38. Improvement JAL-2527
    User preferences for overview window
  39. New Feature JAL-2478
    allow groovy scripts to be automatically imported on startup
  40. New Feature JAL-2477
    Substitution model configuration UI and user preferences
  41. New Feature JAL-2458
    Support access via Ensembl REST API to GenomeHubs
  42. Task JAL-2449
    update dependent configuration beans when Cache.setProperty(..) is called
  43. New Feature JAL-2447
    option to enable/disable 'experimental' options in Jalview's UI
  44. Bug JAL-2414
    Regular expressions containing '$' are not processed correctly in Link URL templates
  45. Improvement JAL-2410
    Gracefully handle user defined colour file availability
  46. Improvement JAL-2343
    Inform user which template is being used to generate BioJS html if it is different from the latest template
  47. New Feature JAL-2063
    Generic GFF annotation source
  48. Bug JAL-2021
    Cannot open links in configured browser on OSX
  49. New Feature JAL-2019
    Proxy configuration for individual web services
  50. New Feature JAL-1978
    grid lines separating residues in shaded alignment
Refresh results
[{"value":"affectedVersion","displayName":"affectedVersion","auto":"true","orderable":"true","searchable":"true","operators":["~","!~","=","!=","in","not in","is","is not","<","<=",">",">="],"types":["com.atlassian.jira.project.version.Version"]},{"value":"assignee","displayName":"assignee","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","was in","was","in","was not","is not","was not in","is","changed","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"attachments","displayName":"attachments","searchable":"true","operators":["is","is not"],"types":["com.atlassian.jira.issue.attachment.Attachment"]},{"value":"\"Business Value\"","displayName":"Business Value - cf[10013]","orderable":"true","searchable":"true","cfid":"cf[10013]","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"category","displayName":"category","auto":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.project.ProjectCategory"]},{"value":"comment","displayName":"comment","searchable":"true","operators":["~","!~"],"types":["java.lang.String"]},{"value":"component","displayName":"component","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.bc.project.component.ProjectComponent"]},{"value":"created","displayName":"created","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"createdDate","displayName":"createdDate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"creator","displayName":"creator","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"description","displayName":"description","orderable":"true","searchable":"true","operators":["~","!~","is","is not"],"types":["java.lang.String"]},{"value":"Development","displayName":"Development - cf[10340]","orderable":"true","searchable":"true","cfid":"cf[10340]","operators":[">",">=","=","<","<=","in","!~","not in","is","is not"],"types":["java.lang.Number","java.lang.String"]},{"value":"due","displayName":"due","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"duedate","displayName":"duedate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"environment","displayName":"environment","orderable":"true","searchable":"true","operators":["~","!~","is","is not"],"types":["java.lang.String"]},{"value":"\"Epic/Theme\"","displayName":"Epic/Theme - cf[10030]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10030]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.label.Label"]},{"value":"\"Epic Colour\"","displayName":"Epic Colour - cf[10045]","orderable":"true","searchable":"true","cfid":"cf[10045]","operators":["=","!=","in","not in","is","is not"],"types":["java.lang.String"]},{"value":"\"Epic Link\"","displayName":"Epic Link - cf[10042]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10042]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.Issue"]},{"value":"\"Epic Name\"","displayName":"Epic Name - cf[10043]","orderable":"true","searchable":"true","cfid":"cf[10043]","operators":["~","!~","=","!=","in","not in","is","is not"],"types":["java.lang.String"]},{"value":"\"Epic Status\"","displayName":"Epic Status - cf[10044]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10044]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.customfields.option.Option"]},{"value":"filter","displayName":"filter","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"fixVersion","displayName":"fixVersion","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","<","was in","was","is not",">=",">","~","not in","in","was not","!~","was not in","is","changed","<="],"types":["com.atlassian.jira.project.version.Version"]},{"value":"Flagged","displayName":"Flagged - cf[10010]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10010]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.customfields.option.Option"]},{"value":"id","displayName":"id","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"issue","displayName":"issue","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"issue.property","displayName":"issue.property","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">=","~","!~","is","is not"],"types":["java.util.Date","java.lang.String","java.lang.Number"]},{"value":"issuekey","displayName":"issuekey","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"issueLinkType","displayName":"issueLinkType","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.link.IssueLinkType"]},{"value":"issuetype","displayName":"issuetype","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"key","displayName":"key","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"labels","displayName":"labels","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.label.Label"]},{"value":"lastViewed","displayName":"lastViewed","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"level","displayName":"level","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.security.IssueSecurityLevel"]},{"value":"\"Mantis ID\"","displayName":"Mantis ID - cf[10000]","orderable":"true","searchable":"true","cfid":"cf[10000]","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"priority","displayName":"priority","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","<","was in","was","is not",">=",">","not in","in","was not","was not in","is","changed","<="],"types":["com.atlassian.jira.issue.priority.Priority"]},{"value":"project","displayName":"project","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.project.Project"]},{"value":"\"Rank (Obsolete)\"","displayName":"Rank (Obsolete) - cf[10040]","orderable":"true","searchable":"true","cfid":"cf[10040]","operators":["is","is not"],"types":["java.lang.Number"]},{"value":"Rank","displayName":"Rank - cf[10240]","orderable":"true","searchable":"true","cfid":"cf[10240]","operators":["=","!=","in","not in","<","<=",">",">="],"types":["java.lang.String"]},{"value":"\"Release Version History\"","displayName":"Release Version History - cf[10020]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10020]","operators":["~","!~","=","!=","in","not in","is","is not","<","<=",">",">="],"types":["com.atlassian.jira.project.version.Version"]},{"value":"reporter","displayName":"reporter","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","was in","was","in","was not","is not","was not in","is","changed","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"request","displayName":"request","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"resolution","displayName":"resolution","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","<","was in","was","is not",">=",">","not in","in","was not","was not in","is","changed","<="],"types":["com.atlassian.jira.issue.resolution.Resolution"]},{"value":"resolutiondate","displayName":"resolutiondate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"resolved","displayName":"resolved","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"savedfilter","displayName":"savedfilter","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"searchrequest","displayName":"searchrequest","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"Sprint","displayName":"Sprint - cf[10041]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10041]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"status","displayName":"status","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","was in","was","in","was not","is not","was not in","is","changed","not in"],"types":["com.atlassian.jira.issue.status.Status"]},{"value":"statusCategory","displayName":"statusCategory","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.status.category.StatusCategory"]},{"value":"\"Story Points\"","displayName":"Story Points - cf[10012]","orderable":"true","searchable":"true","cfid":"cf[10012]","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"summary","displayName":"summary","orderable":"true","searchable":"true","operators":["~","!~","is","is not"],"types":["java.lang.String"]},{"value":"text","displayName":"text","searchable":"true","operators":["~"],"types":["java.lang.String"]},{"value":"type","displayName":"type","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"updated","displayName":"updated","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"updatedDate","displayName":"updatedDate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"Urgency","displayName":"Urgency - cf[10140]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10140]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.customfields.option.Option"]},{"value":"voter","displayName":"voter","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"votes","displayName":"votes","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"watcher","displayName":"watcher","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"watchers","displayName":"watchers","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["java.lang.Number"]}]
[{"value":"cascadeOption(\"\")","displayName":"cascadeOption(\"\")","isList":"true","types":["com.atlassian.jira.issue.customfields.option.CascadingOption"]},{"value":"closedSprints()","displayName":"closedSprints()","isList":"true","types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"componentsLeadByUser()","displayName":"componentsLeadByUser()","isList":"true","types":["com.atlassian.jira.bc.project.component.ProjectComponent"]},{"value":"currentLogin()","displayName":"currentLogin()","types":["java.util.Date"]},{"value":"earliestUnreleasedVersion()","displayName":"earliestUnreleasedVersion()","types":["com.atlassian.jira.project.version.Version"]},{"value":"endOfDay()","displayName":"endOfDay()","types":["java.util.Date"]},{"value":"endOfMonth()","displayName":"endOfMonth()","types":["java.util.Date"]},{"value":"endOfWeek()","displayName":"endOfWeek()","types":["java.util.Date"]},{"value":"endOfYear()","displayName":"endOfYear()","types":["java.util.Date"]},{"value":"futureSprints()","displayName":"futureSprints()","isList":"true","types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"issueHistory()","displayName":"issueHistory()","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"issuesWithRemoteLinksByGlobalId(\"\")","displayName":"issuesWithRemoteLinksByGlobalId(\"\")","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"lastLogin()","displayName":"lastLogin()","types":["java.util.Date"]},{"value":"latestReleasedVersion()","displayName":"latestReleasedVersion()","types":["com.atlassian.jira.project.version.Version"]},{"value":"linkedIssues(\"\")","displayName":"linkedIssues(\"\")","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"membersOf(\"\")","displayName":"membersOf(\"\")","isList":"true","types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"now()","displayName":"now()","types":["java.util.Date"]},{"value":"openSprints()","displayName":"openSprints()","isList":"true","types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"projectsLeadByUser()","displayName":"projectsLeadByUser()","isList":"true","types":["com.atlassian.jira.project.Project"]},{"value":"projectsWhereUserHasPermission(\"\")","displayName":"projectsWhereUserHasPermission(\"\")","isList":"true","types":["com.atlassian.jira.project.Project"]},{"value":"projectsWhereUserHasRole(\"\")","displayName":"projectsWhereUserHasRole(\"\")","isList":"true","types":["com.atlassian.jira.project.Project"]},{"value":"releasedVersions()","displayName":"releasedVersions()","isList":"true","types":["com.atlassian.jira.project.version.Version"]},{"value":"standardIssueTypes()","displayName":"standardIssueTypes()","isList":"true","types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"startOfDay()","displayName":"startOfDay()","types":["java.util.Date"]},{"value":"startOfMonth()","displayName":"startOfMonth()","types":["java.util.Date"]},{"value":"startOfWeek()","displayName":"startOfWeek()","types":["java.util.Date"]},{"value":"startOfYear()","displayName":"startOfYear()","types":["java.util.Date"]},{"value":"subTaskIssueTypes()","displayName":"subTaskIssueTypes()","isList":"true","types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"unreleasedVersions()","displayName":"unreleasedVersions()","isList":"true","types":["com.atlassian.jira.project.version.Version"]},{"value":"updatedBy(\"\")","displayName":"updatedBy(\"\")","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"votedIssues()","displayName":"votedIssues()","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"watchedIssues()","displayName":"watchedIssues()","isList":"true","types":["com.atlassian.jira.issue.Issue"]}]
["explain","select","isnull","commit","isempty","when","rowid","output","number","character","identified","sqrt","delimiter","else","exclusive","lock","catch","join","strict","greater","if","between","order","having","in","byte","double","subtract","outer","index","raw","is","then","execute","input","as","defaults","field","size","left","unique","difference","returns","begin","modulo","object","trans","minus","access","increment","sum","long","into","uid","current","default","file","goto","min","audit","by","share","where","after","power","escape","connect","noaudit","table","validate","cf","set","break","initial","max","more","column","right","trigger","union","asc","rename","decrement","equals","fetch","char","exists","notin","to","first","return","transaction","checkpoint","date","privileges","declare","before","do","integer","float","while","empty","mode","view","whenever","prior","continue","function","intersection","limit","raise","create","from","collation","alter","group","add","all","last","like","resource","count","check","less","encoding","inner","rownum","collate","null","abort","immediate","true","decimal","exec","nowait","changed","desc","option","drop","next","string","session","values","for","distinct","insert","revoke","update","delete","not","synonym","avg","public","and","of","define","alias","divide","end","row","multiply","on","or","intersect","previous","false","go","start","was","rows","any","int","modify","with","inout","boolean","grant","remainder","user"]
{"searchers":{"groups":[{"searchers":[{"name":"Project","id":"project","key":"issue.field.project","isShown":true,"lastViewed":1747597752858},{"name":"Summary","id":"summary","key":"issue.field.summary","isShown":true},{"name":"Type","id":"issuetype","key":"issue.field.issuetype","isShown":true,"lastViewed":1747597752858},{"name":"Status","id":"status","key":"issue.field.status","isShown":true,"lastViewed":1747597752860},{"name":"Priority","id":"priority","key":"issue.field.priority","isShown":true},{"name":"Resolution","id":"resolution","key":"issue.field.resolution","isShown":true},{"name":"Creator","id":"creator","key":"issue.field.creator","isShown":true},{"name":"Affects Version","id":"version","key":"issue.field.affectsversions","isShown":true},{"name":"Fix Version","id":"fixfor","key":"issue.field.fixversions","isShown":true},{"name":"Component","id":"component","key":"issue.field.components","isShown":true,"lastViewed":1747597752862},{"name":"% Limits","id":"workratio","key":"issue.field.workratio","isShown":true},{"name":"Link types","id":"issue_link_type","key":"issue.field.issuelinks","isShown":true},{"name":"Environment","id":"environment","key":"issue.field.environment","isShown":true},{"name":"Description","id":"description","key":"issue.field.description","isShown":true},{"name":"Comment","id":"comment","key":"issue.field.comment","isShown":true},{"name":"Label","id":"labels","key":"issue.field.labels","isShown":true},{"name":"Query","id":"text","key":"text","isShown":true},{"name":"Business Value","id":"customfield_10013","key":"com.atlassian.jira.plugin.system.customfieldtypes:float","isShown":false},{"name":"Development","id":"customfield_10340","key":"com.atlassian.jira.plugins.jira-development-integration-plugin:devsummary","isShown":true},{"name":"Epic Colour","id":"customfield_10045","key":"com.pyxis.greenhopper.jira:gh-epic-color","isShown":false},{"name":"Epic Link","id":"customfield_10042","key":"com.pyxis.greenhopper.jira:gh-epic-link","isShown":true},{"name":"Epic Name","id":"customfield_10043","key":"com.pyxis.greenhopper.jira:gh-epic-label","isShown":true},{"name":"Epic Status","id":"customfield_10044","key":"com.pyxis.greenhopper.jira:gh-epic-status","isShown":false},{"name":"Epic/Theme","id":"customfield_10030","key":"com.atlassian.jira.plugin.system.customfieldtypes:labels","isShown":true},{"name":"Flagged","id":"customfield_10010","key":"com.atlassian.jira.plugin.system.customfieldtypes:multicheckboxes","isShown":true},{"name":"Mantis ID","id":"customfield_10000","key":"com.atlassian.jira.plugin.system.customfieldtypes:importid","isShown":true},{"name":"Rank","id":"customfield_10240","key":"com.pyxis.greenhopper.jira:gh-lexo-rank","isShown":true},{"name":"Rank (Obsolete)","id":"customfield_10011","key":"com.atlassian.jira.plugin.system.customfieldtypes:float","isShown":false},{"name":"Rank (Obsolete)","id":"customfield_10040","key":"com.pyxis.greenhopper.jira:gh-global-rank","isShown":true},{"name":"Release Version History","id":"customfield_10020","key":"com.pyxis.greenhopper.jira:greenhopper-releasedmultiversionhistory","isShown":true},{"name":"Sprint","id":"customfield_10041","key":"com.pyxis.greenhopper.jira:gh-sprint","isShown":true},{"name":"Story Points","id":"customfield_10012","key":"com.atlassian.jira.plugin.system.customfieldtypes:float","isShown":false},{"name":"Urgency","id":"customfield_10140","key":"com.atlassian.jira.plugin.system.customfieldtypes:select","isShown":true}],"type":"DETAILS","title":"Details"},{"searchers":[{"name":"Created Date","id":"created","key":"issue.field.created","isShown":true},{"name":"Updated Date","id":"updated","key":"issue.field.updated","isShown":true},{"name":"Resolution Date","id":"resolutiondate","key":"issue.field.resolution.date","isShown":true},{"name":"Due Date","id":"duedate","key":"issue.field.duedate","isShown":true}],"type":"DATES","title":"Dates"},{"searchers":[{"name":"Assignee","id":"assignee","key":"issue.field.assignee","isShown":true,"lastViewed":1747597752861},{"name":"Reporter","id":"reporter","key":"issue.field.reporter","isShown":true}],"type":"PEOPLE","title":"People"}]},"values":{"issuetype":{"name":"Type","editHtml":"\n\n\n\n <div class=\"field-group aui-field-issuetype\" >\n <label for=\"searcher-type\">Type</label>\n <select class=\"select js-default-checkboxmultiselect\" id=\"searcher-type\" multiple=\"multiple\" name=\"type\"\n data-placeholder-text=\"Find Issue Types...\" size=\"5\">\n <optgroup>\n \n <option class=\" \"\n id=\"type_-2\"\n title=\"All Standard Issue Types\"\n value=\"-2\">All Standard Issue Types</option>\n </optgroup>\n\n <optgroup label=\"Standard Issue Types\">\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&amp;avatarId=10843&amp;avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_1\"\n title=\"Bug\"\n value=\"1\">Bug</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&amp;avatarId=10847&amp;avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_5\"\n title=\"Epic\"\n value=\"5\">Epic</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&amp;avatarId=10850&amp;avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_4\"\n title=\"Improvement\"\n value=\"4\">Improvement</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&amp;avatarId=10851&amp;avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_2\"\n title=\"New Feature\"\n value=\"2\">New Feature</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&amp;avatarId=10855&amp;avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_6\"\n title=\"Story\"\n value=\"6\">Story</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&amp;avatarId=10858&amp;avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_3\"\n title=\"Task\"\n value=\"3\">Task</option>\n </optgroup>\n\n <optgroup label=\"Sub-Task Issue Types\">\n </optgroup>\n </select>\n </div>\n ","validSearcher":true,"isShown":true},"component":{"name":"Component","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldcomponent\">Component:</label><span id=\"fieldcomponent\" class=\"fieldValue\">\n \n Properties and Preferences </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-projectconstant\" >\n <label for=\"searcher-component\">Component</label>\n <select class=\"select js-default-checkboxmultiselect\" id=\"searcher-component\" multiple=\"multiple\" name=\"component\" size=\"2\" aria-label=\"Search for components\">\n <optgroup label=\"\">\n <option value=\"-1\" title=\"No Component\">No Component</option>\n </optgroup>\n <optgroup label=\"\">\n <option value=\"id:analysis\" title=\"analysis\">analysis</option>\n <option value=\"id:annotation\" title=\"annotation\">annotation</option>\n <option value=\"id:awt-gui\" title=\"awt-gui\">awt-gui</option>\n <option value=\"id:Bamboo\" title=\"Bamboo\">Bamboo</option>\n <option value=\"id:Benchmarking\" title=\"Benchmarking\">Benchmarking</option>\n <option value=\"id:bioconda\" title=\"bioconda\">bioconda</option>\n <option value=\"id:bob\" title=\"bob\">bob</option>\n <option value=\"id:cds/protein\" title=\"cds/protein\">cds/protein</option>\n <option value=\"id:checkstyle\" title=\"checkstyle\">checkstyle</option>\n <option value=\"id:chimerax\" title=\"chimerax\">chimerax</option>\n <option value=\"id:colourschemes\" title=\"colourschemes\">colourschemes</option>\n <option value=\"id:Command Line Interface\" title=\"Command Line Interface\">Command Line Interface</option>\n <option value=\"id:conda\" title=\"conda\">conda</option>\n <option value=\"id:controller\" title=\"controller\">controller</option>\n <option value=\"id:DAS\" title=\"DAS\">DAS</option>\n <option value=\"id:data retrieval services\" title=\"data retrieval services\">data retrieval services</option>\n <option value=\"id:Datamodel\" title=\"Datamodel\">Datamodel</option>\n <option value=\"id:debian\" title=\"debian\">debian</option>\n <option value=\"id:Dev and Dep\" title=\"Dev and Dep\">Dev and Dep</option>\n <option value=\"id:documentation\" title=\"documentation\">documentation</option>\n <option value=\"id:editing\" title=\"editing\">editing</option>\n <option value=\"id:Efficiency\" title=\"Efficiency\">Efficiency</option>\n <option value=\"id:Feature Request\" title=\"Feature Request\">Feature Request</option>\n <option value=\"id:feature retrieval service\" title=\"feature retrieval service\">feature retrieval service</option>\n <option value=\"id:file format issue\" title=\"file format issue\">file format issue</option>\n <option value=\"id:find\" title=\"find\">find</option>\n <option value=\"id:genomes\" title=\"genomes\">genomes</option>\n <option value=\"id:getdown\" title=\"getdown\">getdown</option>\n <option value=\"id:gradle\" title=\"gradle\">gradle</option>\n <option value=\"id:groups\" title=\"groups\">groups</option>\n <option value=\"id:gui\" title=\"gui\">gui</option>\n <option value=\"id:gui design issue\" title=\"gui design issue\">gui design issue</option>\n <option value=\"id:i18n\" title=\"i18n\">i18n</option>\n <option value=\"id:install4j\" title=\"install4j\">install4j</option>\n <option value=\"id:Jalview Project\" title=\"Jalview Project\">Jalview Project</option>\n <option value=\"id:jalview-j2s\" title=\"jalview-j2s\">jalview-j2s</option>\n <option value=\"id:jalview-slivka\" title=\"jalview-slivka\">jalview-slivka</option>\n <option value=\"id:java11\" title=\"java11\">java11</option>\n <option value=\"id:java8\" title=\"java8\">java8</option>\n <option value=\"id:java9\" title=\"java9\">java9</option>\n <option value=\"id:jvdesktop\" title=\"jvdesktop\">jvdesktop</option>\n <option value=\"id:JVL-Ajax\" title=\"JVL-Ajax\">JVL-Ajax</option>\n <option value=\"id:jvlite\" title=\"jvlite\">jvlite</option>\n <option value=\"id:JWS-GUI\" title=\"JWS-GUI\">JWS-GUI</option>\n <option value=\"id:JWS1\" title=\"JWS1\">JWS1</option>\n <option value=\"id:JWS2\" title=\"JWS2\">JWS2</option>\n <option value=\"id:launcher\" title=\"launcher\">launcher</option>\n <option value=\"id:localexecution\" title=\"localexecution\">localexecution</option>\n <option value=\"id:logging\" title=\"logging\">logging</option>\n <option value=\"id:na\" title=\"na\">na</option>\n <option value=\"id:openjdk\" title=\"openjdk\">openjdk</option>\n <option value=\"id:OSX-App\" title=\"OSX-App\">OSX-App</option>\n <option value=\"id:overview\" title=\"overview\">overview</option>\n <option value=\"id:PAE\" title=\"PAE\">PAE</option>\n <option value=\"id:pdbe\" title=\"pdbe\">pdbe</option>\n <option value=\"id:printing and export\" title=\"printing and export\">printing and export</option>\n <option selected=\"selected\" value=\"id:Properties and Preferences\" title=\"Properties and Preferences\">Properties and Preferences</option>\n <option value=\"id:provenance\" title=\"provenance\">provenance</option>\n <option value=\"id:pymol\" title=\"pymol\">pymol</option>\n <option value=\"id:Release-process\" title=\"Release-process\">Release-process</option>\n <option value=\"id:renderer\" title=\"renderer\">renderer</option>\n <option value=\"id:REST-API\" title=\"REST-API\">REST-API</option>\n <option value=\"id:Scriptable API\" title=\"Scriptable API\">Scriptable API</option>\n <option value=\"id:selection\" title=\"selection\">selection</option>\n <option value=\"id:sequencefeatures\" title=\"sequencefeatures\">sequencefeatures</option>\n <option value=\"id:server event\" title=\"server event\">server event</option>\n <option value=\"id:slivka\" title=\"slivka\">slivka</option>\n <option value=\"id:Structures\" title=\"Structures\">Structures</option>\n <option value=\"id:Test suite\" title=\"Test suite\">Test suite</option>\n <option value=\"id:training\" title=\"training\">training</option>\n <option value=\"id:Translations\" title=\"Translations\">Translations</option>\n <option value=\"id:trees\" title=\"trees\">trees</option>\n <option value=\"id:urllinks\" title=\"urllinks\">urllinks</option>\n <option value=\"id:usernews\" title=\"usernews\">usernews</option>\n <option value=\"id:uxstudy\" title=\"uxstudy\">uxstudy</option>\n <option value=\"id:vamsas\" title=\"vamsas\">vamsas</option>\n <option value=\"id:variants\" title=\"variants\">variants</option>\n <option value=\"id:varna\" title=\"varna\">varna</option>\n <option value=\"id:web service bug\" title=\"web service bug\">web service bug</option>\n <option value=\"id:web service request\" title=\"web service request\">web service request</option>\n <option value=\"id:website\" title=\"website\">website</option>\n <option value=\"id:Webstart\" title=\"Webstart\">Webstart</option>\n <option value=\"id:Window Geom\" title=\"Window Geom\">Window Geom</option>\n </optgroup>\n </select>\n </div>\n ","jql":"component = \"Properties and Preferences\"","validSearcher":true,"isShown":true},"project":{"name":"Project","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldpid\">Project:</label><span id=\"fieldpid\" class=\"fieldValue\">\n \n <a href=\"/browse/JAL\" title=\"Browse Jalview project\">Jalview</a> </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-project\" >\n <label for=\"searcher-pid\">Project</label>\n \n\n <select class=\"select js-default-checkboxmultiselect\" data-placeholder-text=\"Find Projects...\" id=\"searcher-pid\" multiple=\"multiple\" name=\"pid\" size=\"5\">\n <optgroup label=\"All Projects\">\n \n <option data-icon=\"/secure/projectavatar?pid=10020&size=small\"\n title=\"JABAWS\"\n value=\"10020\">\n JABAWS (JWS)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10010&size=small\"\n selected=\"selected\" title=\"Jalview\"\n value=\"10010\">\n Jalview (JAL)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10030&size=small\"\n title=\"JPred\"\n value=\"10030\">\n JPred (JPRED)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10130&size=small\"\n title=\"ProteoCache\"\n value=\"10130\">\n ProteoCache (PROT)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10230&size=small\"\n title=\"The jalview.org websites \"\n value=\"10230\">\n The jalview.org websites (JVO)\n </option>\n </optgroup>\n </select>\n </div>\n \n","jql":"project = JAL","validSearcher":true,"isShown":true},"assignee":{"name":"Assignee","editHtml":"\n \n <div class=\"field-group aui-field-userlist\" >\n <label for=\"searcher-assigneeSelect\">Assignee</label>\n <fieldset rel=\"assignee\" class=\"hidden user-group-searcher-params\">\n </fieldset>\n <select class=\"js-usergroup-checkboxmultiselect\" multiple=\"multiple\" id=\"assignee\" name=\"assignee\" data-placeholder-text=\"Enter username or group\">\n <optgroup>\n <option class=\"headerOption\" data-icon=\"https://issues.jalview.org/secure/useravatar?size=xsmall&avatarId=10063\" value=\"empty\" title=\"Unassigned\">Unassigned</option>\n </optgroup>\n <optgroup>\n </optgroup>\n </select>\n <input type=\"hidden\" name=\"check_prev_assignee\" value=\"true\">\n </div>\n \n","validSearcher":true,"isShown":true},"status":{"name":"Status","editHtml":"\n <div class=\"field-group aui-field-constants\" >\n <label for=\"searcher-status\">Status</label>\n \n <select class=\"select js-default-checkboxmultiselectstatuslozenge\" data-placeholder-text=\"Find Statuses...\" id=\"searcher-status\" multiple=\"multiple\" name=\"status\" size=\"4\" data-status-lozenge=\"true\">\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/open.png\" value=\"1\" title=\"Open\" data-simple-status=\"{&quot;id&quot;:&quot;1&quot;,&quot;name&quot;:&quot;Open&quot;,&quot;description&quot;:&quot;The issue is open and ready for the assignee to start work on it.&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/open.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:2,&quot;key&quot;:&quot;new&quot;,&quot;colorName&quot;:&quot;blue-gray&quot;}}\">Open</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/inprogress.png\" value=\"3\" title=\"In Progress\" data-simple-status=\"{&quot;id&quot;:&quot;3&quot;,&quot;name&quot;:&quot;In Progress&quot;,&quot;description&quot;:&quot;This issue is being actively worked on at the moment by the assignee.&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/inprogress.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:4,&quot;key&quot;:&quot;indeterminate&quot;,&quot;colorName&quot;:&quot;yellow&quot;}}\">In Progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/reopened.png\" value=\"4\" title=\"Reopened\" data-simple-status=\"{&quot;id&quot;:&quot;4&quot;,&quot;name&quot;:&quot;Reopened&quot;,&quot;description&quot;:&quot;This issue was once resolved, but the resolution was deemed incorrect. From here issues are either marked assigned or resolved.&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/reopened.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:2,&quot;key&quot;:&quot;new&quot;,&quot;colorName&quot;:&quot;blue-gray&quot;}}\">Reopened</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/resolved.png\" value=\"5\" title=\"Resolved\" data-simple-status=\"{&quot;id&quot;:&quot;5&quot;,&quot;name&quot;:&quot;Resolved&quot;,&quot;description&quot;:&quot;A resolution has been taken, and it is awaiting verification by reporter. From here issues are either reopened, or are closed.&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/resolved.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:3,&quot;key&quot;:&quot;done&quot;,&quot;colorName&quot;:&quot;green&quot;}}\">Resolved</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"6\" title=\"Closed\" data-simple-status=\"{&quot;id&quot;:&quot;6&quot;,&quot;name&quot;:&quot;Closed&quot;,&quot;description&quot;:&quot;The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/closed.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:3,&quot;key&quot;:&quot;done&quot;,&quot;colorName&quot;:&quot;green&quot;}}\">Closed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10000\" title=\"Being documented\" data-simple-status=\"{&quot;id&quot;:&quot;10000&quot;,&quot;name&quot;:&quot;Being documented&quot;,&quot;description&quot;:&quot;Feature implementation is complete and passed alpha-testing, and now ready for documentation.&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/generic.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:4,&quot;key&quot;:&quot;indeterminate&quot;,&quot;colorName&quot;:&quot;yellow&quot;}}\">Being documented</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10002\" title=\"Ready for testing\" data-simple-status=\"{&quot;id&quot;:&quot;10002&quot;,&quot;name&quot;:&quot;Ready for testing&quot;,&quot;description&quot;:&quot;Feature is ready for testing by non-developers&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/generic.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:4,&quot;key&quot;:&quot;indeterminate&quot;,&quot;colorName&quot;:&quot;yellow&quot;}}\">Ready for testing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10003\" title=\"Being tested\" data-simple-status=\"{&quot;id&quot;:&quot;10003&quot;,&quot;name&quot;:&quot;Being tested&quot;,&quot;description&quot;:&quot;&quot;,&quot;iconUrl&quot;:&quot;/images/icons/statuses/generic.png&quot;,&quot;statusCategory&quot;:{&quot;id&quot;:4,&quot;key&quot;:&quot;indeterminate&quot;,&quot;colorName&quot;:&quot;yellow&quot;}}\">Being tested</option>\n </select>\n </div>\n \n","validSearcher":true,"isShown":true}}}
[{"id":-1,"name":"My open issues","jql":"assignee = currentUser() AND resolution = Unresolved order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-2,"name":"Reported by me","jql":"reporter = currentUser() order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-4,"name":"All issues","jql":"order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-5,"name":"Open issues","jql":"resolution = Unresolved order by priority DESC,updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-9,"name":"Done issues","jql":"statusCategory = Done order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-3,"name":"Viewed recently","jql":"issuekey in issueHistory() order by lastViewed DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-6,"name":"Created recently","jql":"created >= -1w order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-7,"name":"Resolved recently","jql":"resolutiondate >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-8,"name":"Updated recently","jql":"updated >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false}]
  • Atlassian Jira Project Management Software (v8.10.0#810001-sha1:2a9881c)
  • About Jira
  • Report a problem

Powered by a free Atlassian Jira open source license for Jalview. Try Jira - bug tracking software for your team.

Atlassian