Details
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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Fixed
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Affects Version/s: 2.11.2.0, 2.11.2.1, 2.11.2.2
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Fix Version/s: 2.11.2.3
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Component/s: Properties and Preferences, Structures
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Labels:None
Description
If PymolWin.exe is configured as the executable to be launched by Jalview, then at the point of opening a structure viewer, Jalview reports it cannot locate the pymol executable, meanwhile Pymol does launch - but doesn't show any structure data.
Console log shows that opening Pymol failed with an error like: 'could not connect on socket :0'.
Workaround is to use PyMOLWinWithConsole.bat - this seems to accept the xmlRPC server argument and report the socket correctly so Jalview can connect.
Console log shows that opening Pymol failed with an error like: 'could not connect on socket :0'.
Workaround is to use PyMOLWinWithConsole.bat - this seems to accept the xmlRPC server argument and report the socket correctly so Jalview can connect.