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JAL-2337
Refactor/refine graphics printing to cope with single or split graphics outputsJAL-2335
Incorrect jaccard distance computed for features representing pairwise contacts
Select columns containing feature incorrect for Disul(f|ph)ide Bond features
Cannot open structure chooser for hen lysozyme (Uniprot P00698)JAL-2327
Add isContactFeature property to SequenceFeature
Release 2.10.1
SequenceFeature.equals() fails if score is Float.NaN
Colour structure by sequence incorrect for Disul(f|ph)ide Bond features
Unify architecture for data + html exporting to suit various exports (SVG, BioJS, etc)
Close Jalview Chimera Viewer if user shuts down Chimera
View Mappings has ranges swapped for SIFTS mappings, and mappings are made to 'Not_Observed' residue
Update help page for Above PID colour scheme
No structure mapping made for some structures when loaded in Chimera
Cannot delete final link in the URL links Connections Preferences dialog
Repeated mapping generated from SIFTS
Unit test failures: jalview.bin.CommandLineOperations
Unit test failure: jalview.io.JSONFileTest
Only report the maximal match set for a Find pattern
Threonine (T) is reported as !hydrophobic in Conservation, should be hydrophobic
Sequence to structure mapping missing for lower case residues
dialog warning about disconnecting chimera session allows disconnect to be cancelled
Colour schemes don't handle 'joint consensus' correctlyJAL-2284
Command line argument to export BioJS MSA
URL link from sequence ID adds extra link incorporating sequence name
URL link from sequence ID should match database cross references regardless of case of the database name
dropping a CIF file onto a similarly named sequence doesn't associate 3D structure
new HTML export is buggy in wrapped mode
CTRL-click on selection to obtain Selection menu does not work on El-Capitan
Distinguish between JNet and JPred in UI components for running MSA based or per-sequence predictions
Better encapsulation of PDBEntry properties
Update Jmol to latest version n: 14.6.n
Fix broken link to GFF format
Ability to create a selection from highlighted region (e.g. "highlight from structure")
Sort DBRefEntry items alphabetically for ease of viewing
conservation / consensus out of memory
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