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  1. Jalview
  2. JAL-2327

Add isContactFeature property to SequenceFeature

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.1
    • Component/s: Datamodel
    • Labels:
      None

      Description

      A small step towards abstracting out feature rendering styles - pending an issue to define what that would involve.

      Currently there are 3 places that hard-code special handling for feature type "disulfide bond".
      This is rendered (coloured) at the start and end positions, but not inbetween. Also the tooltip has the format start:end rather than "start end".
      - FeatureRenderer.drawSequence() - for colour rendering
      - SequenceAnnotatonReport.appendFeature() - for tooltip
      - gui.AlignmentPanel.makePNGImageMap() - for mouseover of image

        Attachments

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2323 Colour structure by sequence incorrect for Disul(f|ph)ide Bond features

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-1191 support for hierarchical features and feature groups

          • Major - Major loss of function.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2333 Select columns containing feature incorrect for Disul(f|ph)ide Bond features

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2338 Amend/delete features dialog treats contact features as if they have extents

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: