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  1. Jalview
  2. JAL-2332

Cannot open structure chooser for hen lysozyme (Uniprot P00698)

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.1
    • Component/s: pdbe, Structures
    • Labels:
      None

      Description

      Import P000698 and Select 'View Structures...'.
      In 2.10.1, a dialog is shown indicating a PDBe client error, and the console shows:
      http://www.ebi.ac.uk/pdbe/search/pdb/select?wt=json&fl=pdb_id,title,experimental_method,resolution&rows=500&start=0&q=(uniprot_accession:P00698+OR+uniprot_id:P00698+OR+uniprot_accession:Q90884+OR+uniprot_id:Q90884+OR+pdb_id:132l+OR+pdb_id:193l+OR+pdb_id:194l+OR+pdb_id:1a2y+OR+pdb_id:1aki+OR+pdb_id:1at5+OR+pdb_id:1at6+OR+pdb_id:1azf+OR+pdb_id:1b0d+OR+pdb_id:1b2k+OR+pdb_id:1bgi+OR+pdb_id:1bhz+OR+pdb_id:1bvk+OR+pdb_id:1bvx+OR+pdb_id:1bwh+OR+pdb_id:1bwi+OR+pdb_id:1bwj+OR+pdb_id:1c08+OR+pdb_id:1c10+OR+pdb_id:1dpw+OR+pdb_id:1dpx+OR+pdb_id:1dqj+OR+pdb_id:1e8l+OR+pdb_id:1f0w+OR+pdb_id:1f10+OR+pdb_id:1f3j+OR+pdb_id:1fdl+OR+pdb_id:1flq+OR+pdb_id:1flu+OR+pdb_id:1flw+OR+pdb_id:1fly+OR+pdb_id:1fn5+OR+pdb_id:1g7h+OR+pdb_id:1g7i+OR+pdb_id:1g7j+OR+pdb_id:1g7l+OR+pdb_id:1g7m+OR+pdb_id:1gpq+OR+pdb_id:1gwd+OR+pdb_id:1gxv+OR+pdb_id:1gxx+OR+pdb_id:1h6m+OR+pdb_id:1h87+OR+pdb_id:1hc0+OR+pdb_id:1hel+OR+pdb_id:1hem+OR+pdb_id:1hen+OR+pdb_id:1heo+OR+pdb_id:1hep+OR+pdb_id:1heq+OR+pdb_id:1her+OR+pdb_id:1hew+OR+pdb_id:1hf4+OR+pdb_id:1hsw+OR+pdb_id:1hsx+OR+pdb_id:1ic4+OR+pdb_id:1ic5+OR+pdb_id:1ic7+OR+pdb_id:1iee+OR+pdb_id:1io5+OR+pdb_id:1ioq+OR+pdb_id:1ior+OR+pdb_id:1ios+OR+pdb_id:1iot+OR+pdb_id:1ir7+OR+pdb_id:1ir8+OR+pdb_id:1ir9+OR+pdb_id:1j1o+OR+pdb_id:1j1p+OR+pdb_id:1j1x+OR+pdb_id:1ja2+OR+pdb_id:1ja4+OR+pdb_id:1ja6+OR+pdb_id:1ja7+OR+pdb_id:1jis+OR+pdb_id:1jit+OR+pdb_id:1jiy+OR+pdb_id:1jj0+OR+pdb_id:1jj1+OR+pdb_id:1jj3+OR+pdb_id:1jpo+OR+pdb_id:1jto+OR+pdb_id:1jtt+OR+pdb_id:1kip+OR+pdb_id:1kiq+OR+pdb_id:1kir+OR+pdb_id:1kxw+OR+pdb_id:1kxx+OR+pdb_id:1kxy+OR+pdb_id:1lcn+OR+pdb_id:1lj3+OR+pdb_id:1lj4+OR+pdb_id:1lje+OR+pdb_id:1ljf+OR+pdb_id:1ljg+OR+pdb_id:1ljh+OR+pdb_id:1lji+OR+pdb_id:1ljj+OR+pdb_id:1ljk+OR+pdb_id:1lkr+OR+pdb_id:1lks+OR+pdb_id:1lma+OR+pdb_id:1lpi+OR+pdb_id:1lsa+OR+pdb_id:1lsb+OR+pdb_id:1lsc+OR+pdb_id:1lsd+OR+pdb_id:1lse+OR+pdb_id:1lsf+OR+pdb_id:1lsg+OR+pdb_id:1lsm+OR+pdb_id:1lsn+OR+pdb_id:1lsy+OR+pdb_id:1lsz+OR+pdb_id:1lyo+OR+pdb_id:1lys+OR+pdb_id:1lyz+OR+pdb_id:1lz8+OR+pdb_id:1lz9+OR+pdb_id:1lza+OR+pdb_id:1lzb+OR+pdb_id:1lzc+OR+pdb_id:1lzd+OR+pdb_id:1lze+OR+pdb_id:1lzg+OR+pdb_id:1lzh+OR+pdb_id:1lzn+OR+pdb_id:1lzt+OR+pdb_id:1mel+OR+pdb_id:1mlc+OR+pdb_id:1n4f+OR+pdb_id:1nby+OR+pdb_id:1nbz+OR+pdb_id:1ndg+OR+pdb_id:1ndm+OR+pdb_id:1p2c+OR+pdb_id:1ps5+OR+pdb_id:1qio+OR+pdb_id:1qtk+OR+pdb_id:1rcm+OR+pdb_id:1rfp+OR+pdb_id:1ri8+OR+pdb_id:1rjc+OR+pdb_id:1sf4+OR+pdb_id:1sf6+OR+pdb_id:1sf7+OR+pdb_id:1sfb+OR+pdb_id:1sfg+OR+pdb_id:1sq2+OR+pdb_id:1t3p+OR+pdb_id:1t6v+OR+pdb_id:1ua6+OR+pdb_id:1uc0+OR+pdb_id:1uco+OR+pdb_id:1uia+OR+pdb_id:1uib+OR+pdb_id:1uic+OR+pdb_id:1uid+OR+pdb_id:1uie+OR+pdb_id:1uif+OR+pdb_id:1uig+OR+pdb_id:1uih+OR+pdb_id:1uuz+OR+pdb_id:1v7s+OR+pdb_id:1v7t+OR+pdb_id:1vat+OR+pdb_id:1vau+OR+pdb_id:1vdp+OR+pdb_id:1vdq+OR+pdb_id:1vds+OR+pdb_id:1vdt+OR+pdb_id:1ved+OR+pdb_id:1vfb+OR+pdb_id:1w6z+OR+pdb_id:1wtm+OR+pdb_id:1wtn+OR+pdb_id:1xei+OR+pdb_id:1xej+OR+pdb_id:1xek+OR+pdb_id:1xfp+OR+pdb_id:1xgp+OR+pdb_id:1xgq+OR+pdb_id:1xgr+OR+pdb_id:1xgt+OR+pdb_id:1xgu+OR+pdb_id:1yik+OR+pdb_id:1yil+OR+pdb_id:1ykx+OR+pdb_id:1yky+OR+pdb_id:1ykz+OR+pdb_id:1yl0+OR+pdb_id:1yl1+OR+pdb_id:1yqv+OR+pdb_id:1z55+OR+pdb_id:1zmy+OR+pdb_id:1zv5+OR+pdb_id:1zvh+OR+pdb_id:1zvy+OR+pdb_id:2a6u+OR+pdb_id:2a7d+OR+pdb_id:2a7f+OR+pdb_id:2aub+OR+pdb_id:2b5z+OR+pdb_id:2blx+OR+pdb_id:2bly+OR+pdb_id:2bpu+OR+pdb_id:2c8o+OR+pdb_id:2c8p+OR+pdb_id:2cds+OR+pdb_id:2cgi+OR+pdb_id:2d4i+OR+pdb_id:2d4j+OR+pdb_id:2d4k+OR+pdb_id:2d6b+OR+pdb_id:2d91+OR+pdb_id:2dqc+OR+pdb_id:2dqd+OR+pdb_id:2dqe+OR+pdb_id:2dqf+OR+pdb_id:2dqg+OR+pdb_id:2dqh+OR+pdb_id:2dqi+OR+pdb_id:2dqj+OR+pdb_id:2eiz+OR+pdb_id:2eks+OR+pdb_id:2epe+OR+pdb_id:2f2n+OR+pdb_id:2f30+OR+pdb_id:2f4a+OR+pdb_id:2f4g+OR+pdb_id:2fbb+OR+pdb_id:2g4p+OR+pdb_id:2g4q+OR+pdb_id:2h9j+OR+pdb_id:2h9k+OR+pdb_id:2hfm+OR+pdb_id:2hs7+OR+pdb_id:2hs9+OR+pdb_id:2hso+OR+pdb_id:2htx+OR+pdb_id:2hu1+OR+pdb_id:2hu3+OR+pdb_id:2hub+OR+pdb_id:2i25+OR+pdb_id:2i26+OR+pdb_id:2i6z+OR+pdb_id:2iff+OR+pdb_id:2lym+OR+pdb_id:2lyo+OR+pdb_id:2lyz+OR+pdb_id:2lzh+OR+pdb_id:2lzt+OR+pdb_id:2pc2+OR+pdb_id:2q0m+OR+pdb_id:2vb1+OR+pdb_id:2w1l+OR+pdb_id:2w1m+OR+pdb_id:2w1x+OR+pdb_id:2w1y+OR+pdb_id:2war+OR+pdb_id:2x0a+OR+pdb_id:2xbr+OR+pdb_id:2xbs+OR+pdb_id:2xjw+OR+pdb_id:2xth+OR+pdb_id:2ybh+OR+pdb_id:2ybi+OR+pdb_id:2ybj+OR+pdb_id:2ybl+OR+pdb_id:2ybm+OR+pdb_id:2ybn+OR+pdb_id:2ydg+OR+pdb_id:2yss+OR+pdb_id:2yvb+OR+pdb_id:2z12+OR+pdb_id:2z18+OR+pdb_id:2z19+OR+pdb_id:2znw+OR+pdb_id:2znx+OR+pdb_id:2zq3+OR+pdb_id:2zq4+OR+pdb_id:2zyp+OR+pdb_id:3a34+OR+pdb_id:3a3q+OR+pdb_id:3a3r+OR+pdb_id:3a67+OR+pdb_id:3a6b+OR+pdb_id:3a6c+OR+pdb_id:3a8z+OR+pdb_id:3a90+OR+pdb_id:3a91+OR+pdb_id:3a92+OR+pdb_id:3a93+OR+pdb_id:3a94+OR+pdb_id:3a95+OR+pdb_id:3a96+OR+pdb_id:3agg+OR+pdb_id:3agh+OR+pdb_id:3agi+OR+pdb_id:3ajn+OR+pdb_id:3atn+OR+pdb_id:3ato+OR+pdb_id:3aw6+OR+pdb_id:3aw7+OR+pdb_id:3az4+OR+pdb_id:3az5+OR+pdb_id:3az6+OR+pdb_id:3az7+OR+pdb_id:3b6l+OR+pdb_id:3b72+OR+pdb_id:3d9a+OR+pdb_id:3e3d+OR+pdb_id:3ems+OR+pdb_id:3exd+OR+pdb_id:3f6z+OR+pdb_id:3g3a+OR+pdb_id:3g3b+OR+pdb_id:3hfm+OR+pdb_id:3iju+O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with cookie "__atuvc=1%7C19%2C6%7C20; __utma=222765775.1493942418.1432242380.1432242380.1434549990.2"
      Unexpected token END OF FILE at position 0.

      Looks like the URL GET string maximum length has been reached, so this query would need to be performed as a post.

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              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              jprocter James Procter
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                Updated:
                Resolved: