Details
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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Fixed
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Affects Version/s: 2.10.0, 2.10.0b1
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Fix Version/s: 2.10.1
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Component/s: None
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Labels:None
Description
This corner case was spotted by [~smacgowan]. Sometimes repeated mappings are generated from SIFTS when the SIFTS record contains information for only one chain in a multi-chain PDB entry
To reproduce:
A. Load sequence below
>SNRPA_HUMAN/12-83
----------------------------------------------IYINN-L--------N-------E--
-----K-----I-----K--------K----D--------E----------L--------K--------Ksl
--yaI------F-------------S---------Q----F-----------G----------Q--------
---I-----L-----------D-------------I------------L------------V----------
--S-----------R-----------S---------------------------------L-----------
---K-----------M----------R-----------G---------------Q------------A----
-----------F------------V-----------I-------F--------K----E--------V----
-------S-------S--------A-----T--N-------A----L----R----S----M----QG--FP
F-YDKPM-r-----------------------------------------------------
b. View structure for 3ucu
c. View mapping output
Only one mapping is expected in the output but three repeated mapping is generated for all the three chains in the PDB file entry
To reproduce:
A. Load sequence below
>SNRPA_HUMAN/12-83
----------------------------------------------IYINN-L--------N-------E--
-----K-----I-----K--------K----D--------E----------L--------K--------Ksl
--yaI------F-------------S---------Q----F-----------G----------Q--------
---I-----L-----------D-------------I------------L------------V----------
--S-----------R-----------S---------------------------------L-----------
---K-----------M----------R-----------G---------------Q------------A----
-----------F------------V-----------I-------F--------K----E--------V----
-------S-------S--------A-----T--N-------A----L----R----S----M----QG--FP
F-YDKPM-r-----------------------------------------------------
b. View structure for 3ucu
c. View mapping output
Only one mapping is expected in the output but three repeated mapping is generated for all the three chains in the PDB file entry
Attachments
Issue Links
- related with
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JAL-2299 Un-mappable structures are sometimes offered in the Structure Chooser
- Closed