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  1. Jalview
  2. JAL-2312

Repeated mapping generated from SIFTS

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.0, 2.10.0b1
    • Fix Version/s: 2.10.1
    • Component/s: None
    • Labels:
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      Description

      This corner case was spotted by [~smacgowan]. Sometimes repeated mappings are generated from SIFTS when the SIFTS record contains information for only one chain in a multi-chain PDB entry

      To reproduce:
         A. Load sequence below
      >SNRPA_HUMAN/12-83
      ----------------------------------------------IYINN-L--------N-------E--
      -----K-----I-----K--------K----D--------E----------L--------K--------Ksl
      --yaI------F-------------S---------Q----F-----------G----------Q--------
      ---I-----L-----------D-------------I------------L------------V----------
      --S-----------R-----------S---------------------------------L-----------
      ---K-----------M----------R-----------G---------------Q------------A----
      -----------F------------V-----------I-------F--------K----E--------V----
      -------S-------S--------A-----T--N-------A----L----R----S----M----QG--FP
      F-YDKPM-r-----------------------------------------------------

        b. View structure for 3ucu
        c. View mapping output

      Only one mapping is expected in the output but three repeated mapping is generated for all the three chains in the PDB file entry

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              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Dates

                Created:
                Updated:
                Resolved: