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  1. Jalview
  2. JAL-3725

Position calculation fails for overlapping virtual features

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      Description

      When rendering virtual features on protein products, tooltip and popup menu fail for features which extend beyond the CDS mapped range, such as overlapping exon features (or CDS including a stop codon).

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          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2341 Support feature type ontologies for control, display, and analysis of sequence features

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-3806 selections from tree built from CDS aren't propagated to Protein alignment

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3567 Genomic position shown in virtual feature tooltip

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3706 Virtual feature location breaks for mapped stop codon

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3751 Overlapping CDS in ENA accession not correctly mapped by Jalview

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-3010 Make Feature Settings 'ontology aware'

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-1191 support for hierarchical features and feature groups

          • Major - Major loss of function.
          • In Progress

          Task - A task that needs to be done. JAL-3763 Redact change that had CDS share dataset sequence of parent gene or transcript

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Updated:
                Resolved: