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  1. Jalview
  2. JAL-2341

Support feature type ontologies for control, display, and analysis of sequence features

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    • Epic Name:
      feature_ontologies

      Description

      Currently, Jalview groups, filters and renders features according to their type string, however different feature sources employ different strings for the same feature type - either trivially (e.g. disulpfide_bond vs disulphide_bond), or more dramatically (e.g. cross_link and covalent_ligand to link two sites).

      * Jalview should group features regardless of trivial variation
      * Jalview should also offer display controls that take advantage of categorical groupings - e.g. show/hide all types of disorder features, all types of ligand-binding features, or all types of conformational shape (sheet, helix, turn) features.
      * Jalview should appropriately display and analyse features according to their type (e.g. JAL-2327 - pairwise contact features should be treated as a pair of positions, not a range defined by start and end positions).

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Updated: