[JAL-3763] Redact change that had CDS share dataset sequence of parent gene or transcript - Jalview

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Type: Task
Status: Closed
Priority: Major
Resolution: Fixed
Affects Version/s: 2.11.1.2
Fix Version/s: 2.11.1.3, 2.11.2
Component/s: None
Labels:
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Description

This change gave rise to numerous problems and should be undone, so each CDS sequence in a coding/peptide split frame has its own distinct dataset sequence, avoiding ambiguities in residue/sequence/feature mapping and alignment.

Attachments

Issue Links

blocks

JAL-3748 CDS alignment doesn't match original CDS when aligning protein products

Closed

related with

JAL-3613 Peptide-to-CDS tracking broken for EMBL gene products

Closed

JAL-3700 Complement sequence correspondence is broken for CDS with shared dataset sequence

Closed

JAL-3725 Position calculation fails for overlapping virtual features

Closed

JAL-3751 Overlapping CDS in ENA accession not correctly mapped by Jalview

Closed

Activity

People

Assignee:: Mungo Carstairs

Reporter:: Mungo Carstairs

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 08/Oct/20 9:49 AM

Updated:: 04/Feb/22 1:49 PM

Resolved:: 29/Oct/20 2:32 PM