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  1. Jalview
  2. JAL-1191

support for hierarchical features and feature groups

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    Details

    • Type: New Feature
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 3.0
    • Component/s: Datamodel, gui
    • Labels:
      None

      Description

      Sequence annotation is often hierarchical in nature - complex annotation involves several detailed regions that signify that a higher level annotation can be attached to a broader region of sequence, or attributed to the sequence region as a whole.

      Furthermore, annotation types and annotation groups are hierarchical since they are often based on ontological terms, and its useful to be able to control the display of features by selecting a general term with which a group of features are associated (e.g. show or hide all binding sites - regardless of whether they are protein, ligand, etc...).

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          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-741 sequence feature panel becomes unusable when more than 20 structures are displayed

          • Blocker - Blocks development and/or testing work, production could not run.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-3725 Position calculation fails for overlapping virtual features

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-906 use obo ontologies for collecting data and analysis services into categories

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-3010 Make Feature Settings 'ontology aware'

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          Task - A task that needs to be done. JAL-2327 Add isContactFeature property to SequenceFeature

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1192 create multiple sequence features on the same sequence

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: