Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3751

Overlapping CDS in ENA accession not correctly mapped by Jalview

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Being tested
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.1.0, 2.11.1.1, 2.11.1.2
    • Fix Version/s: 2.11.1.3, 2.11.1.4, 2.11.2
    • Component/s: cds/protein
    • Labels:
      None

      Description

      EMBL:MN908947 (https://www.ebi.ac.uk/ena/browser/api/embl/MN908947.3) first CDS feature has location join(266..13468,13468..21555)
      but Jalview has mapped this as 266-21555, which is wrong (one base too short). The mapping should preserve the single base overlap of the exons.

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              soares Ben Soares
              Reporter:
              gmungoc Mungo Carstairs
              Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated: