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  1. Jalview
  2. JAL-3751

Overlapping CDS in ENA accession not correctly mapped by Jalview

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      Description

      EMBL:MN908947 (https://www.ebi.ac.uk/ena/browser/api/embl/MN908947.3) first CDS feature has location join(266..13468,13468..21555)
      but Jalview has mapped this as 266-21555, which is wrong (one base too short). The mapping should preserve the single base overlap of the exons.

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3725 Position calculation fails for overlapping virtual features

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3761 MapList.locateInFrom() gives wrong result for overlapping from ranges

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-3763 Redact change that had CDS share dataset sequence of parent gene or transcript

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Resolved: