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  1. Jalview
  2. JAL-2480

Encapsulate performant access to sequence features

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.3
    • Component/s: Datamodel
    • Labels:

      Description

      Scope of this issue is the datamodel and public API for read and write of features for a sequence. A performant data store is made possible by the use of NCList (JAL-2446) for nested features, and can be tailored to the requirements of Jalview (JAL-2444).

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-971 large numbers of feature groups causes feature rendering to become sluggish

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2481 Performant lookup of features for rendering

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2483 Performant lookup of feature types and groups for Feature Settings

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2490 Performant lookup of features at position

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2492 Performant lookup of non-positional features

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2525 Performant lookup of features by Ontology term

          • Major - Major loss of function.
          • Closed
          depends on

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2446 Add NCList data structure to Jalview

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-2474 Impact analysis: migration to SequenceFeatures store

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-2505 Make 'key' members of SequenceFeature final

          • Major - Major loss of function.
          • Closed
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2574 Encapsulate find features for columns in Sequence

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: