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  1. Jalview
  2. JAL-2574

Encapsulate find features for columns in Sequence

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.3
    • Component/s: sequencefeatures
    • Labels:

      Description

      Currently Sequence.findFeatures(from, to) operators on residue positions.
      All callers of this method first call Sequence.findPosition() for the start and end column positions of the range involved. They may also then do some post-processing of the returned results (JAL-2547).
      All of this would be made simpler and safer by changing findFeatures() to operate on column rather than residue positions.

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          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-2541 Delete/Cut selection doesn't relocate sequence features correctly when start of sequence is removed

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2547 Sequence feature tooltips on gaps

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2480 Encapsulate performant access to sequence features

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Created:
                Updated:
                Resolved: