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  1. Jalview
  2. JAL-2446

Add NCList data structure to Jalview

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    • Epic Name:
      nclist-in-jalview

      Description

      Nested Containment List (https://doi.org/10.1093/bioinformatics/btl647) supports efficient lookup of features overlapping a given range. Jalview can make use of that!

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          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-1117 Overview window takes a long time to refresh and CPU load becomes very high with lots of sequence features

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Task - A task that needs to be done. JAL-3140 Publish NCList as IntervalStoreJ

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2480 Encapsulate performant access to sequence features

          • Major - Major loss of function.
          • Closed
          related with

          Task - A task that needs to be done. JAL-2444 Define requirements for efficient sequence feature datastore

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-2474 Impact analysis: migration to SequenceFeatures store

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2205 Improve efficiency of datamodel for handling locus datasets

          • Major - Major loss of function.
          • Open

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: