Export - CSV (All fields)
Export - CSV (Current fields)
JAL-4543
Enable column selection on line graph annotations
Selection of Sequences in Sequence Panel Does Not Highlight Corresponding Nodes in Secondary Structure Similarity TreeJAL-4540
Tree calculation out of memory error not passed to user!
find causes stack overflow
Select/Hide/Highlight columns or sequence positions by per-sequence annotation
Tree node labels incorrectly appear grey when a tree is first createdJAL-4531
Release 2.11.5.0
Add an Applescript .app to the DMG to allow easy installation to ~/Applications folder and optionally add Jalview to the Dock
Allow calculation of annotation track based trees involving just one or two sequences
Allow secondary structure rows with 'PROVIDER' metadata to be exported and imported as Jalview annotations file
Update jalview webservices documentation page
Loading progress bar remains visible indefinitely for some structures in SIMSApiper data
allow trees/PCA for secondary structures when just one sequence is shown in algiment
sensible precision for tree distance labels
store and restore trees linked to annotation rows in Jalview projects
Resizing an alignment window from the top can completely obscure sequences and annotation divider
Add Coloured Backgrounds for Grouped Nodes in Similarity Tree
Residue highlighting in pymol not working in 3.0.4
Consistent colours assigned to groups generated when subdividing tree
Assign perceptually distinct colours for secondary structure providers
Exported Consensus annotation then loads (Load Features/Annotations) as a Pfam file sequence onto the alignment
install4j installation wizard looks bad in dark mode
Update flatlaf for more OS visual integration
Migrate to Java 11 for Jalview production versionJAL-4489
automatic clustering of sequences using distance matricesJAL-4488
routine service and program integration tests
secondary structure annotation not mapped correctly to sequence for some structures
Temporarily configure 3d structure viewer via CLI for a jalview session
CAN'T INSTALL Jalview
Reformat Secondary Structure Consensus Annotation Labels
jalview --version or other command line output include misleading 'Version: TEST' information
allow pairwise alignment gap parameters to be adjusted
cannot store/restore group associated secondary structure consensus annotationsJAL-4463
Importing lots of sequences and structures example
An app for a particular getdown channel can't launch builds from other channels due to failed background image downloads
Colour by secondary structure conservation
Label sequence groups and tree internal nodes with diversity information
integrate OSX codesigning scripts in jalview's repository
Show number of sequences contributing to the consensus secondary structure in the status bar/tool tip
optionally hide consensus/annotations when no data is available
Add subtitle in PCA and Tree panel
Jalview could recognise .features, .annotations and .newick files belonging to an alignment file when all dragged-and-dropped onto it
Record source metadata in derived/transferred annotation rows
Calculate tree using secondary structure annotation
PAE partition not shown in the same place when tree is closed and reopened, or layout changed, and cluster colours lost loading back from jalview project
nf-core/proteinfold integration
Parse RNA secondary structure annotation from 'extended' fasta-style files
Consensus secondary structure annotation rows for sequences with multiple sources of structural data
HiDPI support in Windows
View number of sequences per subgroup in a separate window
[{"value":"affectedVersion","displayName":"affectedVersion","auto":"true","orderable":"true","searchable":"true","operators":["~","!~","=","!=","in","not in","is","is not","<","<=",">",">="],"types":["com.atlassian.jira.project.version.Version"]},{"value":"assignee","displayName":"assignee","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","was in","was","in","was not","is not","was not in","is","changed","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"attachments","displayName":"attachments","searchable":"true","operators":["is","is not"],"types":["com.atlassian.jira.issue.attachment.Attachment"]},{"value":"\"Business Value\"","displayName":"Business Value - cf[10013]","orderable":"true","searchable":"true","cfid":"cf[10013]","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"category","displayName":"category","auto":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.project.ProjectCategory"]},{"value":"comment","displayName":"comment","searchable":"true","operators":["~","!~"],"types":["java.lang.String"]},{"value":"component","displayName":"component","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.bc.project.component.ProjectComponent"]},{"value":"created","displayName":"created","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"createdDate","displayName":"createdDate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"creator","displayName":"creator","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"description","displayName":"description","orderable":"true","searchable":"true","operators":["~","!~","is","is not"],"types":["java.lang.String"]},{"value":"Development","displayName":"Development - cf[10340]","orderable":"true","searchable":"true","cfid":"cf[10340]","operators":[">",">=","=","<","<=","in","!~","not in","is","is not"],"types":["java.lang.Number","java.lang.String"]},{"value":"due","displayName":"due","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"duedate","displayName":"duedate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"environment","displayName":"environment","orderable":"true","searchable":"true","operators":["~","!~","is","is not"],"types":["java.lang.String"]},{"value":"\"Epic/Theme\"","displayName":"Epic/Theme - cf[10030]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10030]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.label.Label"]},{"value":"\"Epic Colour\"","displayName":"Epic Colour - cf[10045]","orderable":"true","searchable":"true","cfid":"cf[10045]","operators":["=","!=","in","not in","is","is not"],"types":["java.lang.String"]},{"value":"\"Epic Link\"","displayName":"Epic Link - cf[10042]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10042]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.Issue"]},{"value":"\"Epic Name\"","displayName":"Epic Name - cf[10043]","orderable":"true","searchable":"true","cfid":"cf[10043]","operators":["~","!~","=","!=","in","not in","is","is not"],"types":["java.lang.String"]},{"value":"\"Epic Status\"","displayName":"Epic Status - cf[10044]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10044]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.customfields.option.Option"]},{"value":"filter","displayName":"filter","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"fixVersion","displayName":"fixVersion","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","<","was in","was","is not",">=",">","~","not in","in","was not","!~","was not in","is","changed","<="],"types":["com.atlassian.jira.project.version.Version"]},{"value":"Flagged","displayName":"Flagged - cf[10010]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10010]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.customfields.option.Option"]},{"value":"id","displayName":"id","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"issue","displayName":"issue","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"issue.property","displayName":"issue.property","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">=","~","!~","is","is not"],"types":["java.util.Date","java.lang.String","java.lang.Number"]},{"value":"issuekey","displayName":"issuekey","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"issueLinkType","displayName":"issueLinkType","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.link.IssueLinkType"]},{"value":"issuetype","displayName":"issuetype","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"key","displayName":"key","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["com.atlassian.jira.issue.Issue"]},{"value":"labels","displayName":"labels","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.label.Label"]},{"value":"lastViewed","displayName":"lastViewed","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"level","displayName":"level","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.security.IssueSecurityLevel"]},{"value":"\"Mantis ID\"","displayName":"Mantis ID - cf[10000]","orderable":"true","searchable":"true","cfid":"cf[10000]","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"priority","displayName":"priority","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","<","was in","was","is not",">=",">","not in","in","was not","was not in","is","changed","<="],"types":["com.atlassian.jira.issue.priority.Priority"]},{"value":"project","displayName":"project","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.project.Project"]},{"value":"\"Rank (Obsolete)\"","displayName":"Rank (Obsolete) - cf[10040]","orderable":"true","searchable":"true","cfid":"cf[10040]","operators":["is","is not"],"types":["java.lang.Number"]},{"value":"Rank","displayName":"Rank - cf[10240]","orderable":"true","searchable":"true","cfid":"cf[10240]","operators":["=","!=","in","not in","<","<=",">",">="],"types":["java.lang.String"]},{"value":"\"Release Version History\"","displayName":"Release Version History - cf[10020]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10020]","operators":["~","!~","=","!=","in","not in","is","is not","<","<=",">",">="],"types":["com.atlassian.jira.project.version.Version"]},{"value":"reporter","displayName":"reporter","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","was in","was","in","was not","is not","was not in","is","changed","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"request","displayName":"request","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"resolution","displayName":"resolution","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","<","was in","was","is not",">=",">","not in","in","was not","was not in","is","changed","<="],"types":["com.atlassian.jira.issue.resolution.Resolution"]},{"value":"resolutiondate","displayName":"resolutiondate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"resolved","displayName":"resolved","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"savedfilter","displayName":"savedfilter","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"searchrequest","displayName":"searchrequest","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.search.SearchRequest"]},{"value":"Sprint","displayName":"Sprint - cf[10041]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10041]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"status","displayName":"status","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","was in","was","in","was not","is not","was not in","is","changed","not in"],"types":["com.atlassian.jira.issue.status.Status"]},{"value":"statusCategory","displayName":"statusCategory","auto":"true","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.issue.status.category.StatusCategory"]},{"value":"\"Story Points\"","displayName":"Story Points - cf[10012]","orderable":"true","searchable":"true","cfid":"cf[10012]","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"summary","displayName":"summary","orderable":"true","searchable":"true","operators":["~","!~","is","is not"],"types":["java.lang.String"]},{"value":"text","displayName":"text","searchable":"true","operators":["~"],"types":["java.lang.String"]},{"value":"type","displayName":"type","auto":"true","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"updated","displayName":"updated","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"updatedDate","displayName":"updatedDate","orderable":"true","searchable":"true","operators":["=","!=","in","not in","is","is not","<","<=",">",">="],"types":["java.util.Date"]},{"value":"Urgency","displayName":"Urgency - cf[10140]","auto":"true","orderable":"true","searchable":"true","cfid":"cf[10140]","operators":["=","!=","in","not in","is","is not"],"types":["com.atlassian.jira.issue.customfields.option.Option"]},{"value":"voter","displayName":"voter","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"votes","displayName":"votes","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["java.lang.Number"]},{"value":"watcher","displayName":"watcher","searchable":"true","operators":["=","!=","in","not in"],"types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"watchers","displayName":"watchers","orderable":"true","searchable":"true","operators":["=","!=","in","not in","<","<=",">",">="],"types":["java.lang.Number"]}]
[{"value":"cascadeOption(\"\")","displayName":"cascadeOption(\"\")","isList":"true","types":["com.atlassian.jira.issue.customfields.option.CascadingOption"]},{"value":"closedSprints()","displayName":"closedSprints()","isList":"true","types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"componentsLeadByUser()","displayName":"componentsLeadByUser()","isList":"true","types":["com.atlassian.jira.bc.project.component.ProjectComponent"]},{"value":"currentLogin()","displayName":"currentLogin()","types":["java.util.Date"]},{"value":"earliestUnreleasedVersion()","displayName":"earliestUnreleasedVersion()","types":["com.atlassian.jira.project.version.Version"]},{"value":"endOfDay()","displayName":"endOfDay()","types":["java.util.Date"]},{"value":"endOfMonth()","displayName":"endOfMonth()","types":["java.util.Date"]},{"value":"endOfWeek()","displayName":"endOfWeek()","types":["java.util.Date"]},{"value":"endOfYear()","displayName":"endOfYear()","types":["java.util.Date"]},{"value":"futureSprints()","displayName":"futureSprints()","isList":"true","types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"issueHistory()","displayName":"issueHistory()","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"issuesWithRemoteLinksByGlobalId(\"\")","displayName":"issuesWithRemoteLinksByGlobalId(\"\")","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"lastLogin()","displayName":"lastLogin()","types":["java.util.Date"]},{"value":"latestReleasedVersion()","displayName":"latestReleasedVersion()","types":["com.atlassian.jira.project.version.Version"]},{"value":"linkedIssues(\"\")","displayName":"linkedIssues(\"\")","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"membersOf(\"\")","displayName":"membersOf(\"\")","isList":"true","types":["com.atlassian.jira.user.ApplicationUser"]},{"value":"now()","displayName":"now()","types":["java.util.Date"]},{"value":"openSprints()","displayName":"openSprints()","isList":"true","types":["com.atlassian.greenhopper.service.sprint.Sprint"]},{"value":"projectsLeadByUser()","displayName":"projectsLeadByUser()","isList":"true","types":["com.atlassian.jira.project.Project"]},{"value":"projectsWhereUserHasPermission(\"\")","displayName":"projectsWhereUserHasPermission(\"\")","isList":"true","types":["com.atlassian.jira.project.Project"]},{"value":"projectsWhereUserHasRole(\"\")","displayName":"projectsWhereUserHasRole(\"\")","isList":"true","types":["com.atlassian.jira.project.Project"]},{"value":"releasedVersions()","displayName":"releasedVersions()","isList":"true","types":["com.atlassian.jira.project.version.Version"]},{"value":"standardIssueTypes()","displayName":"standardIssueTypes()","isList":"true","types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"startOfDay()","displayName":"startOfDay()","types":["java.util.Date"]},{"value":"startOfMonth()","displayName":"startOfMonth()","types":["java.util.Date"]},{"value":"startOfWeek()","displayName":"startOfWeek()","types":["java.util.Date"]},{"value":"startOfYear()","displayName":"startOfYear()","types":["java.util.Date"]},{"value":"subTaskIssueTypes()","displayName":"subTaskIssueTypes()","isList":"true","types":["com.atlassian.jira.issue.issuetype.IssueType"]},{"value":"unreleasedVersions()","displayName":"unreleasedVersions()","isList":"true","types":["com.atlassian.jira.project.version.Version"]},{"value":"updatedBy(\"\")","displayName":"updatedBy(\"\")","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"votedIssues()","displayName":"votedIssues()","isList":"true","types":["com.atlassian.jira.issue.Issue"]},{"value":"watchedIssues()","displayName":"watchedIssues()","isList":"true","types":["com.atlassian.jira.issue.Issue"]}]
["explain","select","isnull","commit","isempty","when","rowid","output","number","character","identified","sqrt","delimiter","else","exclusive","lock","catch","join","strict","greater","if","between","order","having","in","byte","double","subtract","outer","index","raw","is","then","execute","input","as","defaults","field","size","left","unique","difference","returns","begin","modulo","object","trans","minus","access","increment","sum","long","into","uid","current","default","file","goto","min","audit","by","share","where","after","power","escape","connect","noaudit","table","validate","cf","set","break","initial","max","more","column","right","trigger","union","asc","rename","decrement","equals","fetch","char","exists","notin","to","first","return","transaction","checkpoint","date","privileges","declare","before","do","integer","float","while","empty","mode","view","whenever","prior","continue","function","intersection","limit","raise","create","from","collation","alter","group","add","all","last","like","resource","count","check","less","encoding","inner","rownum","collate","null","abort","immediate","true","decimal","exec","nowait","changed","desc","option","drop","next","string","session","values","for","distinct","insert","revoke","update","delete","not","synonym","avg","public","and","of","define","alias","divide","end","row","multiply","on","or","intersect","previous","false","go","start","was","rows","any","int","modify","with","inout","boolean","grant","remainder","user"]
{"searchers":{"groups":[{"searchers":[{"name":"Project","id":"project","key":"issue.field.project","isShown":true,"lastViewed":1747450195977},{"name":"Summary","id":"summary","key":"issue.field.summary","isShown":true},{"name":"Type","id":"issuetype","key":"issue.field.issuetype","isShown":true,"lastViewed":1747450195977},{"name":"Status","id":"status","key":"issue.field.status","isShown":true,"lastViewed":1747450195979},{"name":"Priority","id":"priority","key":"issue.field.priority","isShown":true},{"name":"Resolution","id":"resolution","key":"issue.field.resolution","isShown":true},{"name":"Creator","id":"creator","key":"issue.field.creator","isShown":true},{"name":"Affects Version","id":"version","key":"issue.field.affectsversions","isShown":true},{"name":"Fix Version","id":"fixfor","key":"issue.field.fixversions","isShown":true,"lastViewed":1747450195980},{"name":"Component","id":"component","key":"issue.field.components","isShown":true},{"name":"% Limits","id":"workratio","key":"issue.field.workratio","isShown":true},{"name":"Link types","id":"issue_link_type","key":"issue.field.issuelinks","isShown":true},{"name":"Environment","id":"environment","key":"issue.field.environment","isShown":true},{"name":"Description","id":"description","key":"issue.field.description","isShown":true},{"name":"Comment","id":"comment","key":"issue.field.comment","isShown":true},{"name":"Label","id":"labels","key":"issue.field.labels","isShown":true},{"name":"Query","id":"text","key":"text","isShown":true},{"name":"Business Value","id":"customfield_10013","key":"com.atlassian.jira.plugin.system.customfieldtypes:float","isShown":false},{"name":"Development","id":"customfield_10340","key":"com.atlassian.jira.plugins.jira-development-integration-plugin:devsummary","isShown":true},{"name":"Epic Colour","id":"customfield_10045","key":"com.pyxis.greenhopper.jira:gh-epic-color","isShown":false},{"name":"Epic Link","id":"customfield_10042","key":"com.pyxis.greenhopper.jira:gh-epic-link","isShown":true},{"name":"Epic Name","id":"customfield_10043","key":"com.pyxis.greenhopper.jira:gh-epic-label","isShown":true},{"name":"Epic Status","id":"customfield_10044","key":"com.pyxis.greenhopper.jira:gh-epic-status","isShown":false},{"name":"Epic/Theme","id":"customfield_10030","key":"com.atlassian.jira.plugin.system.customfieldtypes:labels","isShown":true},{"name":"Flagged","id":"customfield_10010","key":"com.atlassian.jira.plugin.system.customfieldtypes:multicheckboxes","isShown":true},{"name":"Mantis ID","id":"customfield_10000","key":"com.atlassian.jira.plugin.system.customfieldtypes:importid","isShown":true},{"name":"Rank","id":"customfield_10240","key":"com.pyxis.greenhopper.jira:gh-lexo-rank","isShown":true},{"name":"Rank (Obsolete)","id":"customfield_10011","key":"com.atlassian.jira.plugin.system.customfieldtypes:float","isShown":false},{"name":"Rank (Obsolete)","id":"customfield_10040","key":"com.pyxis.greenhopper.jira:gh-global-rank","isShown":true},{"name":"Release Version History","id":"customfield_10020","key":"com.pyxis.greenhopper.jira:greenhopper-releasedmultiversionhistory","isShown":true},{"name":"Sprint","id":"customfield_10041","key":"com.pyxis.greenhopper.jira:gh-sprint","isShown":true},{"name":"Story Points","id":"customfield_10012","key":"com.atlassian.jira.plugin.system.customfieldtypes:float","isShown":false},{"name":"Urgency","id":"customfield_10140","key":"com.atlassian.jira.plugin.system.customfieldtypes:select","isShown":true}],"type":"DETAILS","title":"Details"},{"searchers":[{"name":"Created Date","id":"created","key":"issue.field.created","isShown":true},{"name":"Updated Date","id":"updated","key":"issue.field.updated","isShown":true},{"name":"Resolution Date","id":"resolutiondate","key":"issue.field.resolution.date","isShown":true},{"name":"Due Date","id":"duedate","key":"issue.field.duedate","isShown":true}],"type":"DATES","title":"Dates"},{"searchers":[{"name":"Assignee","id":"assignee","key":"issue.field.assignee","isShown":true,"lastViewed":1747450195980},{"name":"Reporter","id":"reporter","key":"issue.field.reporter","isShown":true}],"type":"PEOPLE","title":"People"}]},"values":{"issuetype":{"name":"Type","editHtml":"\n\n\n\n <div class=\"field-group aui-field-issuetype\" >\n <label for=\"searcher-type\">Type</label>\n <select class=\"select js-default-checkboxmultiselect\" id=\"searcher-type\" multiple=\"multiple\" name=\"type\"\n data-placeholder-text=\"Find Issue Types...\" size=\"5\">\n <optgroup>\n \n <option class=\" \"\n id=\"type_-2\"\n title=\"All Standard Issue Types\"\n value=\"-2\">All Standard Issue Types</option>\n </optgroup>\n\n <optgroup label=\"Standard Issue Types\">\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&avatarId=10843&avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_1\"\n title=\"Bug\"\n value=\"1\">Bug</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&avatarId=10847&avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_5\"\n title=\"Epic\"\n value=\"5\">Epic</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&avatarId=10850&avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_4\"\n title=\"Improvement\"\n value=\"4\">Improvement</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&avatarId=10851&avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_2\"\n title=\"New Feature\"\n value=\"2\">New Feature</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&avatarId=10855&avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_6\"\n title=\"Story\"\n value=\"6\">Story</option>\n \n <option class=\" imagebacked 10000 \"\n data-icon=\"/secure/viewavatar?size=xsmall&avatarId=10858&avatarType=issuetype\"\n data-fallback-icon=\"/images/icons/issuetypes/blank.png\"\n id=\"type_3\"\n title=\"Task\"\n value=\"3\">Task</option>\n </optgroup>\n\n <optgroup label=\"Sub-Task Issue Types\">\n </optgroup>\n </select>\n </div>\n ","validSearcher":true,"isShown":true},"project":{"name":"Project","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldpid\">Project:</label><span id=\"fieldpid\" class=\"fieldValue\">\n \n <a href=\"/browse/JAL\" title=\"Browse Jalview project\">Jalview</a> </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-project\" >\n <label for=\"searcher-pid\">Project</label>\n \n\n <select class=\"select js-default-checkboxmultiselect\" data-placeholder-text=\"Find Projects...\" id=\"searcher-pid\" multiple=\"multiple\" name=\"pid\" size=\"5\">\n <optgroup label=\"All Projects\">\n \n <option data-icon=\"/secure/projectavatar?pid=10020&size=small\"\n title=\"JABAWS\"\n value=\"10020\">\n JABAWS (JWS)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10010&size=small\"\n selected=\"selected\" title=\"Jalview\"\n value=\"10010\">\n Jalview (JAL)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10030&size=small\"\n title=\"JPred\"\n value=\"10030\">\n JPred (JPRED)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10130&size=small\"\n title=\"ProteoCache\"\n value=\"10130\">\n ProteoCache (PROT)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10230&size=small\"\n title=\"The jalview.org websites \"\n value=\"10230\">\n The jalview.org websites (JVO)\n </option>\n </optgroup>\n </select>\n </div>\n \n","jql":"project = JAL","validSearcher":true,"isShown":true},"fixfor":{"name":"Fix Version","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldfixfor\">Fix Version:</label><span id=\"fieldfixfor\" class=\"fieldValue\">\n \n 2.11.5.0 </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-projectconstant\" >\n <label for=\"searcher-fixfor\">Fix Version</label>\n <select class=\"select js-default-checkboxmultiselect\" id=\"searcher-fixfor\" multiple=\"multiple\" name=\"fixfor\" size=\"2\" >\n <optgroup label=\"\">\n <option value=\"-1\" title=\"No Version\">No Version</option>\n <option value=\"-2\" title=\"Unreleased Versions\">Unreleased Versions</option>\n <option value=\"-3\" title=\"Released Versions\">Released Versions</option>\n </optgroup>\n <optgroup label=\"Unreleased Versions\">\n <option value=\"id:2.11.12\" title=\"2.11.12\">2.11.12</option>\n <option value=\"id:2.11.3\" title=\"2.11.3\">2.11.3</option>\n <option value=\"id:2.11.3.3b1\" title=\"2.11.3.3b1\">2.11.3.3b1</option>\n <option value=\"id:2.11.3_js\" title=\"2.11.3_js\">2.11.3_js</option>\n <option value=\"id:2.11.4\" title=\"2.11.4\">2.11.4</option>\n <option value=\"id:2.11.4.2\" title=\"2.11.4.2\">2.11.4.2</option>\n <option value=\"id:2.11.5\" title=\"2.11.5\">2.11.5</option>\n <option selected=\"selected\" value=\"id:2.11.5.0\" title=\"2.11.5.0\">2.11.5.0</option>\n <option value=\"id:2.12\" title=\"2.12\">2.12</option>\n <option value=\"id:2.12.0\" title=\"2.12.0\">2.12.0</option>\n <option value=\"id:2.12.0_js\" title=\"2.12.0_js\">2.12.0_js</option>\n <option value=\"id:2.12.1\" title=\"2.12.1\">2.12.1</option>\n <option value=\"id:2.13.0\" title=\"2.13.0\">2.13.0</option>\n </optgroup>\n <optgroup label=\"Released Versions\">\n <option value=\"id:2.07\" title=\"2.07\">2.07</option>\n <option value=\"id:2.08\" title=\"2.08\">2.08</option>\n <option value=\"id:2.08.1\" title=\"2.08.1\">2.08.1</option>\n <option value=\"id:2.1\" title=\"2.1\">2.1</option>\n <option value=\"id:2.1.1\" title=\"2.1.1\">2.1.1</option>\n <option value=\"id:2.10.0\" title=\"2.10.0\">2.10.0</option>\n <option value=\"id:2.10.0b1\" title=\"2.10.0b1\">2.10.0b1</option>\n <option value=\"id:2.10.1\" title=\"2.10.1\">2.10.1</option>\n <option value=\"id:2.10.2\" title=\"2.10.2\">2.10.2</option>\n <option value=\"id:2.10.2b1\" title=\"2.10.2b1\">2.10.2b1</option>\n <option value=\"id:2.10.2b2\" title=\"2.10.2b2\">2.10.2b2</option>\n <option value=\"id:2.10.3\" title=\"2.10.3\">2.10.3</option>\n <option value=\"id:2.10.3b1\" title=\"2.10.3b1\">2.10.3b1</option>\n <option value=\"id:2.10.4\" title=\"2.10.4\">2.10.4</option>\n <option value=\"id:2.10.4b1\" title=\"2.10.4b1\">2.10.4b1</option>\n <option value=\"id:2.10.5\" title=\"2.10.5\">2.10.5</option>\n <option value=\"id:2.11.0\" title=\"2.11.0\">2.11.0</option>\n <option value=\"id:2.11.1.0\" title=\"2.11.1.0\">2.11.1.0</option>\n <option value=\"id:2.11.1.1\" title=\"2.11.1.1\">2.11.1.1</option>\n <option value=\"id:2.11.1.2\" title=\"2.11.1.2\">2.11.1.2</option>\n <option value=\"id:2.11.1.3\" title=\"2.11.1.3\">2.11.1.3</option>\n <option value=\"id:2.11.1.4\" title=\"2.11.1.4\">2.11.1.4</option>\n <option value=\"id:2.11.1.5\" title=\"2.11.1.5\">2.11.1.5</option>\n <option value=\"id:2.11.1.6\" title=\"2.11.1.6\">2.11.1.6</option>\n <option value=\"id:2.11.1.7\" title=\"2.11.1.7\">2.11.1.7</option>\n <option value=\"id:2.11.2.0\" title=\"2.11.2.0\">2.11.2.0</option>\n <option value=\"id:2.11.2.1\" title=\"2.11.2.1\">2.11.2.1</option>\n <option value=\"id:2.11.2.2\" title=\"2.11.2.2\">2.11.2.2</option>\n <option value=\"id:2.11.2.3\" title=\"2.11.2.3\">2.11.2.3</option>\n <option value=\"id:2.11.2.4\" title=\"2.11.2.4\">2.11.2.4</option>\n <option value=\"id:2.11.2.5\" title=\"2.11.2.5\">2.11.2.5</option>\n <option value=\"id:2.11.2.6\" title=\"2.11.2.6\">2.11.2.6</option>\n <option value=\"id:2.11.2.7\" title=\"2.11.2.7\">2.11.2.7</option>\n <option value=\"id:2.11.3.0\" title=\"2.11.3.0\">2.11.3.0</option>\n <option value=\"id:2.11.3.1\" title=\"2.11.3.1\">2.11.3.1</option>\n <option value=\"id:2.11.3.2\" title=\"2.11.3.2\">2.11.3.2</option>\n <option value=\"id:2.11.3.3\" title=\"2.11.3.3\">2.11.3.3</option>\n <option value=\"id:2.11.4.0\" title=\"2.11.4.0\">2.11.4.0</option>\n <option value=\"id:2.11.4.1\" title=\"2.11.4.1\">2.11.4.1</option>\n <option value=\"id:2.2\" title=\"2.2\">2.2</option>\n <option value=\"id:2.2.1\" title=\"2.2.1\">2.2.1</option>\n <option value=\"id:2.3\" title=\"2.3\">2.3</option>\n <option value=\"id:2.4\" title=\"2.4\">2.4</option>\n <option value=\"id:2.4.0b2\" title=\"2.4.0b2\">2.4.0b2</option>\n <option value=\"id:2.5\" title=\"2.5\">2.5</option>\n <option value=\"id:2.5.1\" title=\"2.5.1\">2.5.1</option>\n <option value=\"id:2.6\" title=\"2.6\">2.6</option>\n <option value=\"id:2.6.1\" title=\"2.6.1\">2.6.1</option>\n <option value=\"id:2.7\" title=\"2.7\">2.7</option>\n <option value=\"id:2.8\" title=\"2.8\">2.8</option>\n <option value=\"id:2.8.0b1\" title=\"2.8.0b1\">2.8.0b1</option>\n <option value=\"id:2.8.1\" title=\"2.8.1\">2.8.1</option>\n <option value=\"id:2.8.2\" title=\"2.8.2\">2.8.2</option>\n <option value=\"id:2.8.2b1\" title=\"2.8.2b1\">2.8.2b1</option>\n <option value=\"id:2.9\" title=\"2.9\">2.9</option>\n <option value=\"id:2.9.0b1\" title=\"2.9.0b1\">2.9.0b1</option>\n <option value=\"id:2.9.0b2\" title=\"2.9.0b2\">2.9.0b2</option>\n <option value=\"id:a.2.08.1\" title=\"a.2.08.1\">a.2.08.1</option>\n <option value=\"id:a2.07\" title=\"a2.07\">a2.07</option>\n <option value=\"id:a2.08\" title=\"a2.08\">a2.08</option>\n </optgroup>\n </select>\n </div>\n ","jql":"fixVersion = 2.11.5.0","validSearcher":true,"isShown":true},"assignee":{"name":"Assignee","editHtml":"\n \n <div class=\"field-group aui-field-userlist\" >\n <label for=\"searcher-assigneeSelect\">Assignee</label>\n <fieldset rel=\"assignee\" class=\"hidden user-group-searcher-params\">\n </fieldset>\n <select class=\"js-usergroup-checkboxmultiselect\" multiple=\"multiple\" id=\"assignee\" name=\"assignee\" data-placeholder-text=\"Enter username or group\">\n <optgroup>\n <option class=\"headerOption\" data-icon=\"https://issues.jalview.org/secure/useravatar?size=xsmall&avatarId=10063\" value=\"empty\" title=\"Unassigned\">Unassigned</option>\n </optgroup>\n <optgroup>\n </optgroup>\n </select>\n <input type=\"hidden\" name=\"check_prev_assignee\" value=\"true\">\n </div>\n \n","validSearcher":true,"isShown":true},"status":{"name":"Status","editHtml":"\n <div class=\"field-group aui-field-constants\" >\n <label for=\"searcher-status\">Status</label>\n \n <select class=\"select js-default-checkboxmultiselectstatuslozenge\" data-placeholder-text=\"Find Statuses...\" id=\"searcher-status\" multiple=\"multiple\" name=\"status\" size=\"4\" data-status-lozenge=\"true\">\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/open.png\" value=\"1\" title=\"Open\" data-simple-status=\"{"id":"1","name":"Open","description":"The issue is open and ready for the assignee to start work on it.","iconUrl":"/images/icons/statuses/open.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Open</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/inprogress.png\" value=\"3\" title=\"In Progress\" data-simple-status=\"{"id":"3","name":"In Progress","description":"This issue is being actively worked on at the moment by the assignee.","iconUrl":"/images/icons/statuses/inprogress.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">In Progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/reopened.png\" value=\"4\" title=\"Reopened\" data-simple-status=\"{"id":"4","name":"Reopened","description":"This issue was once resolved, but the resolution was deemed incorrect. From here issues are either marked assigned or resolved.","iconUrl":"/images/icons/statuses/reopened.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Reopened</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/resolved.png\" value=\"5\" title=\"Resolved\" data-simple-status=\"{"id":"5","name":"Resolved","description":"A resolution has been taken, and it is awaiting verification by reporter. From here issues are either reopened, or are closed.","iconUrl":"/images/icons/statuses/resolved.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Resolved</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"6\" title=\"Closed\" data-simple-status=\"{"id":"6","name":"Closed","description":"The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.","iconUrl":"/images/icons/statuses/closed.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Closed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10000\" title=\"Being documented\" data-simple-status=\"{"id":"10000","name":"Being documented","description":"Feature implementation is complete and passed alpha-testing, and now ready for documentation.","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Being documented</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10002\" title=\"Ready for testing\" data-simple-status=\"{"id":"10002","name":"Ready for testing","description":"Feature is ready for testing by non-developers","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Ready for testing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10003\" title=\"Being tested\" data-simple-status=\"{"id":"10003","name":"Being tested","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Being tested</option>\n </select>\n </div>\n \n","validSearcher":true,"isShown":true}}}
[{"id":-1,"name":"My open issues","jql":"assignee = currentUser() AND resolution = Unresolved order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-2,"name":"Reported by me","jql":"reporter = currentUser() order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":true},{"id":-4,"name":"All issues","jql":"order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-5,"name":"Open issues","jql":"resolution = Unresolved order by priority DESC,updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-9,"name":"Done issues","jql":"statusCategory = Done order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-3,"name":"Viewed recently","jql":"issuekey in issueHistory() order by lastViewed DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-6,"name":"Created recently","jql":"created >= -1w order by created DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-7,"name":"Resolved recently","jql":"resolutiondate >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false},{"id":-8,"name":"Updated recently","jql":"updated >= -1w order by updated DESC","isSystem":true,"sharePermissions":[],"requiresLogin":false}]