[JAL-4527] Allow secondary structure rows with 'PROVIDER' metadata to be exported and imported as Jalview annotations file - Jalview

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Type: Improvement
Status: Closed
Priority: Blocker
Resolution: Fixed
Affects Version/s: None
Fix Version/s: 2.11.5.0
Component/s: annotation, file format issue
Labels:
None

Epic Link:
consensusannotation
Sprint:
2.11.5.0 alpha

Description

The Jalview annotation file format needs extending to support exporting or importing key/value properties or 'CalcId' strings which are employed in JAL-4399 and elsewhere to store metadata from secondary structure annotation tracks derived from 3D structures.

Attachments

Issue Links

blocks

JAL-4528 Allow calculation of annotation track based trees involving just one or two sequences

Closed

mentioned on

Commit - JAL-4527 alignment annotation utility method to promote sequence-associated...

Commit - JAL-4527 Documentation for import/export annotation file

Commit - JAL-4527 first pass at exporting/importing rows with calcId - jalview detects...

Commit - JAL-4527 Implementation of import annotation file with PROVIDER & CALCID

Commit - JAL-4527 Import/export annotation file with PROVIDER & CALCID

Commit - JAL-4527 Import/export annotation file with PROVIDER & CALCID test files

Commit - JAL-4527 JAL-4528 - workaround check for minimum number of sequences when...

Commit - JAL-4527 JAL-4528 allow selection to be of size 1 if we are calculating an annotation tree

Commit - JAL-4527 Review changes for import/export annotation file with PROVIDER

Commit - JAL-4527 slight refactor of code to finish up review and accept :)

Commit - JAL-4531 release notes for...

(7 mentioned on)

Activity

People

Assignee:: Renia Correya

Reporter:: James Procter

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 13/Mar/25 4:05 PM

Updated:: 6 days ago 11:23 PM

Resolved:: 01/Aug/25 3:20 PM