[JAL-3748] CDS alignment doesn't match original CDS when aligning protein products - Jalview

XML

Word

Printable

Details

Type: Bug
Status: Closed
Priority: Blocker
Resolution: Fixed
Affects Version/s: 2.11.1.0, 2.11.1.1, 2.11.1.2
Fix Version/s: 2.11.1.3, 2.11.1.5, 2.11.2
Component/s: cds/protein, na
Labels:
- knowndefect

Description

Unclear how many ENA entries are affected by this as yet! Ideally this should be fixed ASAP as a patch release if it can.

1. Import MN908947
2. Show EMBLCDSPROTEIN crossrefs
3. Align the proteins shown with any alignment service.
4. The resulting alignment appears to have the correct 'ranges' for CDS, but the CDS sequences are not correct.

Attachments

Issue Links

blocks

JAL-3806 selections from tree built from CDS aren't propagated to Protein alignment

Closed

depends on

JAL-3700 Complement sequence correspondence is broken for CDS with shared dataset sequence

Closed

JAL-3763 Redact change that had CDS share dataset sequence of parent gene or transcript

Closed

related with

JAL-3749 Duplicate CDS sequences when importing project saved for CDS/Protein alignment from Uniprot crossrefs for ENA:L20893

Closed

Activity

People

Assignee:: James Procter

Reporter:: James Procter

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 15/Sep/20 5:54 PM

Updated:: 04/Feb/22 1:48 PM

Resolved:: 04/Feb/22 1:48 PM