[JAL-3700] Complement sequence correspondence is broken for CDS with shared dataset sequence - Jalview

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Type: Bug
Status: Closed
Priority: Major
Resolution: Fixed
Affects Version/s: 2.11.1.0, 2.11.1.1, 2.11.1.2
Fix Version/s: 2.11.1.3, 2.11.2, 2.11.2.0
Component/s: cds/protein, jvdesktop
Labels:
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Description

Fetch J03321 from EMBL and Get Cross-References | UNIPROT to see CDS and protein split frame view.
Selecting sequence(s) in the CDS panel results in selection of the first peptide (only) in the complement whose dataset sequence maps to that of the selection, rather than the protein product(s) corresponding to the selected. That is, selecting any CDS other than AAA91568.1 selects P0CE19. (AAA91568 is from reverse strand CDS, so has a new dataset sequence generated, and is not affected by this bug.)

Propagation of protein selections to CDS is similarly broken.

Attachments

Issue Links

blocks

JAL-3748 CDS alignment doesn't match original CDS when aligning protein products

Closed

related with

JAL-3806 selections from tree built from CDS aren't propagated to Protein alignment

Closed

JAL-3763 Redact change that had CDS share dataset sequence of parent gene or transcript

Closed

JAL-3251 Add biotype info to sequence mappings

In Progress

Activity

People

Assignee:: Mungo Carstairs

Reporter:: Mungo Carstairs

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 01/Aug/20 4:56 PM

Updated:: 04/Mar/22 4:39 PM

Resolved:: 04/Mar/22 4:39 PM