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  1. Jalview
  2. JAL-3567

Genomic position shown in virtual feature tooltip

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      Description

      Virtual feature tooltips shown on Protein from CDS include the CDS position rather than the Protein sequence position at the beginning of the tooltip.
      Convention is to report the extent of the feature in the local sequence coordinate system rather than originating one!

        Attachments

        1. Screen Shot 2020-03-31 at 19.40.48.png
          Screen Shot 2020-03-31 at 19.40.48.png
          68 kB
        2. PopupMenu.png
          PopupMenu.png
          107 kB
        3. TooltipProteinCoords.png
          TooltipProteinCoords.png
          108 kB
        4. JAL-3567.jvp
          40 kB
        5. LinkedFeatureDetails.png
          LinkedFeatureDetails.png
          225 kB

          Issue Links

          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3187 Option to show CDS/peptide 'complement' features

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-3605 Review way in which URLs for features are reported to user and preserved via GFF & Jalview Features

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-3564 Allow 'virtual CDS/Protein' features to be overlaid without opening a CDS/Protein linked alignment

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-3706 Virtual feature location breaks for mapped stop codon

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3725 Position calculation fails for overlapping virtual features

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: