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  1. Jalview
  2. JAL-3564

Allow 'virtual CDS/Protein' features to be overlaid without opening a CDS/Protein linked alignment

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.1
    • Fix Version/s: 2.11.2
    • Component/s: cds/protein
    • Labels:
      None
    • Urgency:
      Nice to have

      Description

      The ability to overlay cds or protein features from a linked alignment view is great, but its introduction comes at the expense of being able to 'Retrieve IDs' from Ensembl for a Uniprot sequence in order to bring sequence variants onto an already displayed view.

      Whilst one could manually (or otherwise) transfer the virtual features via a sequence feature file onto the protein sequences, it would be nicer to be able to configure CDS features for a protein view *without* actually creating a CDS alignment, but just using existing CDS mappings for sequences.
       

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter Jim Procter
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                Dates

                Created:
                Updated: