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  1. Jalview
  2. JAL-3355

Not all structure chain mappings restored from Jalview project

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    Details

    • Type: Bug
    • Status: In Progress
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.10.3, 2.11.0, 2.11.1
    • Fix Version/s: 2.11.2, 2.11.5.0
    • Component/s: jvdesktop, Structures
    • Labels:
      None
    • Environment:
      Jalview Version: 2.11.0
      Jalview Installation: Source git-commit:a148aca2d [releases/Release_2_11_Branch]
      Build Date: 16:43:41 04 July 2019
      Java version: 1.8.0_202
      x86_64 Mac OS X 10.12.6

      Description

      Structure Preferences set to use SIFTS mapping, Jmol or Chimera viewer.
      Fetch P30419 from Uniprot and view structure 5O6H.
      View Mapping shows both chains A and B mapped to sequence.
      Save to a project file and reload - only chain A is now mapped.
      Colour changes to the alignment are only transferred to chain A.

        Attachments

          Issue Links

          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2693 Efficient handling of 1-sequence:multi-chain structure relationships

          • Major - Major loss of function.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2225 structure viewer doesn't get mappings for all chains when viewing 'cached' structures

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2691 Not all chains are mapped when multimeric assemblies are imported via CIF file

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3489 Not all chains mapped for multimeric structure loaded from file

          • Major - Major loss of function.
          • Ready for testing

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2694 detect and map duplicate chains for biological assemblies

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              gmungoc Mungo Carstairs
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              Watchers:
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                Dates

                Created:
                Updated: