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  1. Jalview
  2. JAL-2694

detect and map duplicate chains for biological assemblies

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.1
    • Component/s: Structures
    • Labels:
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      Description

      biological unit or PISA predicted assemblies include metadata in mmCIF that specify how chains in the asymetric unit map to copied chains in the assembly.

      Copied chains should be mapped to the same sequence as their asymmetric unit (AU) chain (ie the mapping for the entity), so for uniprot sequences, SIFTS mappings to AU chains should also be propagated to any copies in the assembly.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Created:
                Updated: