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  1. Jalview
  2. JAL-2694

detect and map duplicate chains for biological assemblies

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.1
    • Component/s: Structures
    • Labels:
      None

      Description

      biological unit or PISA predicted assemblies include metadata in mmCIF that specify how chains in the asymetric unit map to copied chains in the assembly.

      Copied chains should be mapped to the same sequence as their asymmetric unit (AU) chain (ie the mapping for the entity), so for uniprot sequences, SIFTS mappings to AU chains should also be propagated to any copies in the assembly.

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3355 Not all structure chain mappings restored from Jalview project

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2691 Not all chains are mapped when multimeric assemblies are imported via CIF file

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3489 Not all chains mapped for multimeric structure loaded from file

          • Major - Major loss of function.
          • Ready for testing

          Improvement - An improvement or enhancement to an existing feature or task. JAL-4478 support import of alphafold3 and multimer prediction metadata

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: