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  1. Jalview
  2. JAL-2225

structure viewer doesn't get mappings for all chains when viewing 'cached' structures

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.0, 2.10.1, 2.10.2, 2.10.2b1
    • Fix Version/s: 2.10.3
    • Component/s: Structures
    • Labels:
      None

      Description

      Carry over from JAL-1962 following the 'to reproduce' instructions reveals a different problem:

      1. I loaded a local copy of 3a6s.pdb
      2. I added 1gaq via File->Add Sequences and the PDB fetcher.
      3. Selected all sequences, right-clicked on the 3A6S|A sequence and opened 'View Structure...'
      4. Changed view to 'Cached PDB Files' and selected all chains.
      5. Hit View

      View mappings had the right mappings in it, but only one chain was coloured and mapped in the structure view.

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          Issue Links

          is duplicated by

          Bug - A problem which impairs or prevents the functions of the product. JAL-2691 Not all chains are mapped when multimeric assemblies are imported via CIF file

          • Major - Major loss of function.
          • Closed
          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2824 Review and revise the 'Structure Mapping Report'

          • Blocker - Blocks development and/or testing work, production could not run.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-1962 View mapping shows alignments between all chains when viewing multi-chain PDB

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3355 Not all structure chain mappings restored from Jalview project

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-3402 Structure viewer includes unmapped chains in View Chains menu

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: