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  1. Jalview
  2. JAL-892

store varna window state in jalview project

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.7_gsoc11, 2.9
    • Component/s: file format issue, na
    • Labels:
      None

      Description

      Any nucleic acid secondary structure displays associated with alignments should be stored and recoverable from a jalview project.

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-1215 export RNA sequences and annotation as RNAML

          • Major - Major loss of function.
          • Open
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-880 Saving and Loading Jalview project state generates errors with RNA consensus secondary structure

          • Critical - Crashes, loss of data, severe memory leak.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-893 upgrade varna to version that supports version independent state storage/retrieval

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1779 Refactor AppVarna to support save to project and responsive updating

          • Major - Major loss of function.
          • Closed
          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-842 Integrate a VARNA window in Jalview gui

          • Major - Major loss of function.
          • Closed

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-1357 Alignment based Consensus RNA secondary secondary structure calculation

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1450 Structures in VARNA should update in response to edits in Jalview

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: