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  1. Jalview
  2. JAL-724

submission and visualization of results from Sequence Harmony and Multi-Relief web server

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.7
    • Component/s: None
    • Labels:
      None

      Description

      The SHMMR service provides a REST interface enabling functional site predictions to be made for an alignment and subgroup definition. See http://www.ibi.vu.nl/programs/shmrwww/ for more information.

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          Issue Links

          blocks

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-715 user-configurable REST service client

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-945 Incorrect SHMR submission for sequences with identical IDs

          • Blocker - Blocks development and/or testing work, production could not run.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-949 RSBS client 'upload as file' option does not actually upload as file

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-979 revise SHMR RSBS definition to ensure alignment is uploaded via ali_file parameter

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-1309 multi-harmony (SHMMR) method doesn't submit correct partitions for input data

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-1298 Multi-harmony analysis cannot be run when only two groups created

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: