Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-4386

Calculate tree using secondary structure annotation

    XMLWordPrintable

    Details

    • Type: New Feature
    • Status: In Progress
    • Priority: Blocker
    • Resolution: Unresolved
    • Affects Version/s: 2.11.3.2, 2.11.3.3, 2.11.4.0
    • Fix Version/s: 2.11.4.0, 2.11.5.0
    • Component/s: analysis, gui
    • Labels:
      None

      Description

      This feature calculate the similarity of secondary structure for each pair of aligned protein sequences and generate tree based on the similarity calculations.

      Since there can be more than one secondary structure per sequence, secondary structure based trees should link their leaves to both the sequence in the alignment and the annotation row(s) providing the secondary structure, so a sequence may appear more than once in the tree.

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              reniacorreya Renia Correya
              Reporter:
              reniacorreya Renia Correya
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated: