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  1. Jalview
  2. JAL-3806

selections from tree built from CDS aren't propagated to Protein alignment

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.1.3, 2.11.1.4, 2.11.1.5, 2.11.1.6
    • Fix Version/s: 2.11.2.0
    • Component/s: cds/protein
    • Labels:
    • Urgency:
      Highest

      Description

      I have noticed that in the split screen view, when I create a tree it only colours the names of sequences in the alignment that it was created from.

      So a DNA tree doesn’t colour the protein alignment.

        Attachments

          Issue Links

          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-3748 CDS alignment doesn't match original CDS when aligning protein products

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3700 Complement sequence correspondence is broken for CDS with shared dataset sequence

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-3725 Position calculation fails for overlapping virtual features

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              sduce Suzanne Duce
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                Dates

                Created:
                Updated:
                Resolved: