Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3211

More efficient bulk load of sequence features

    XMLWordPrintable

    Details

    • Type: Improvement
    • Status: In Progress
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: jalview-j2s, jvdesktop
    • Labels:
      None

      Description

      Load from project currently adds sequence features one at a time. This is noticeably slow in JalviewJS. Investigate whether exploiting the 'bulk load' constructor for IntervalStore would be more performant. If so, also check whether this can also be done for features fetched from Ensembl (e.g. many thousands of variants on a gene).

        Attachments

        1. braf2.jvp
          1.65 MB
          Mungo Carstairs

          Issue Links

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
              Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated: