[JAL-2817] Loading existing trees into Archaeopteryx binds the tree sequences to the alignment - Jalview

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Type: Task
Status: Ready for testing
Priority: Major
Resolution: Unresolved
Affects Version/s: None
Fix Version/s: None
Component/s: None
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Epic Link:
archaeopteryx

Description

Loading in existing trees into Archaeopteryx should bind the loaded sequences to the sequences present in the alignment viewer as much as possible, similar to how the native Jalview tree viewer does it currently.

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related with

JAL-2805 Support loading in existing trees in the major tree file formats

Ready for testing

JAL-2794 Reflect node selections in the new Aptx tree viewer back onto the Jalview alignment

Ready for testing

mentioned on

Commit - JAL-2817 Bind calculated tree leaves by key, not by sequence name

Commit - JAL-2817 Bind phyloXML leaves that name only their sequence

Commit - JAL-2817 Detach newly created Archaeopteryx tabs

Commit - JAL-2817 Detach replaced trees from their previous associations

Commit - JAL-2817 Recheck the tree minimum and name leaves from their sequence

Commit - JAL-2817 Remove unused sequence-to-node association maps

Commit - JAL-2817 Restore original calculation chooser text

Commit - JAL-2817 Share calculated tree dispatch and verify duplicate bindings

Commit - JAL-2817 Test sequence-named leaves against the association itself

Commit - JAL-2817 Verify leaf identities and alignment state during handover

(7 mentioned on)

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People

Assignee:: Koen van der Heide

Reporter:: Koen van der Heide

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 03/Nov/17 11:35 AM

Updated:: 09/Oct/26 12:17 PM