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  1. Jalview
  2. JAL-2805

Support loading in existing trees in the major tree file formats

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    Details

    • Type: New Feature
    • Status: Ready for testing
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.10.3_archeopteryx
    • Component/s: None
    • Labels:
      None

      Description

      Archaeopteryx supports the loading in of trees in PhyloXML, NHX, New Hampshire, Nexus and Tree of Life formats. This functionality should be migrated to the loading in of associated trees in the Jalview sequence alignment.

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          duplicates

          Bug - A problem which impairs or prevents the functions of the product. JAL-110 Extend Tree Viewer to support richer treefile formats

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Ready for testing

          New Feature - A new feature of the product, which has yet to be developed. JAL-1951 Nexus support

          • Major - Major loss of function.
          • In Progress
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2868 Archaeopteryx still attempts to load invalid files

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-281 Load tree from URL

          • Critical - Crashes, loss of data, severe memory leak.
          • In Progress

          Task - A task that needs to be done. JAL-2883 Enrich sequence data passed between Forester and Jalview

          • Major - Major loss of function.
          • Open

          Task - A task that needs to be done. JAL-2817 Loading existing trees into Archaeopteryx binds the tree sequences to the alignment

          • Major - Major loss of function.
          • Ready for testing

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              People

              Assignee:
              kjvdheide Koen van der Heide
              Reporter:
              kjvdheide Koen van der Heide
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                Dates

                Created:
                Updated: