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  1. Jalview
  2. JAL-2649

test failure: jalview.gui.AlignFrameTest.testNewView_colourThresholds

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.10.2
    • Fix Version/s: 2.10.2
    • Component/s: Datamodel, file format issue
    • Labels:
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      Description

      Noticed this test was failing when trying to merge in JAL-2592.

      This test doesn't always fail - only when run via 'ant testng' or individually from Eclipse, but not when the whole AlignFrameTest suite is run interactively with Eclipse.

      Fails at assert for Conservation flag being set for new view
      jalview.gui.AlignFrameTest.testNewView_colourThresholds(AlignFrameTest.java:550)

      If you colour an alignment, enable 'Colour by conservation', and then hit CMD/CTRL-T to create a new view the newly created view does not have conservation shading displayed - although the UI shows that conservation is enabled.

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2385 Colour threshold slider doesn't update value when switching groups

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2650 Conservation colouring not applied in new view with a user defined colourscheme

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2651 Store calculation results for autoannotation rows in Jalview XML objects

          • Major - Major loss of function.
          • Open

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Updated:
                Resolved: