[JAL-2650] Conservation colouring not applied in new view with a user defined colourscheme - Jalview

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Type: Bug
Status: Closed
Priority: Major
Resolution: Fixed
Affects Version/s: 2.10.2
Fix Version/s: 2.10.2
Component/s: gui, renderer
Labels:
- indevelop

Description

Clear any existing user defined colourschemes from your jalview_properties
Import a protein alignment (feredoxins).
Create a user defined colourscheme "foo" and save it to a file
Close alignment (or even restart jalview) and open it again.
Apply the foo colourscheme.
Select Colour by conservation
Click back to alignment window to get focus & Press Ctrl-T/CMD-T

New view has user defined colourscheme applied, but conservation shading is not applied.

Attachments

Issue Links

related with

JAL-2649 test failure: jalview.gui.AlignFrameTest.testNewView_colourThresholds

Closed

JAL-2660 New View with Above PID colouring incorrect if ignoreGaps is false

Closed

JAL-2371 Separate colour threshold/fading from colour schemes

Closed

Activity

People

Assignee:: James Procter

Reporter:: James Procter

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 07/Aug/17 4:06 PM

Updated:: 10/Aug/17 2:50 PM

Resolved:: 09/Aug/17 4:29 PM