Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-2629

HMMER Command Implementation

    XMLWordPrintable

    Details

    • Type: Epic
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.12.0
    • Component/s: analysis, localexecution
    • Labels:
      None
    • Epic Name:
      HMMERCommands

      Description

      Capability for hmmalign, hmmbuild and hmmsearch will be added. This will involve a new menu item, from which all of these commands can be launched. Sequences added to an alignment with a HMM attached will align automatically to said HMM.

        Attachments

          Issue Links

          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-1949 Integration of the Hmmer3 EMBL-EBI server

          • Major - Major loss of function.
          • Open

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-1366 Alignment visualizations with respect to reference sequences and profiles

          • Major - Major loss of function.
          • Open

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2668 HMM visualisation and MSA analysis

          • Major - Major loss of function.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2907 Stockholm alignment column and sequence annotation should not use whitespace for gap

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Ready for testing

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              tva Thomas van Aalten
              Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated: