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  1. Jalview
  2. JAL-1366

Alignment visualizations with respect to reference sequences and profiles

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    Details

    • Type: Epic
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Epic Name:
      reference seqs

      Description

      Often, one is exploring an alignment with respect to some reference sequence or profile model. In this case, visualizations should reflect this, and allow users to analyse similarities and differences with respect to the reference.

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          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-1628 New annotation file statement to hide insertions in current reference sequence

          • Major - Major loss of function.
          • Closed
          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-4400 Secondary and tertiary structure based profile visualisation and analysis

          • Major - Major loss of function.
          • Open

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2629 HMMER Command Implementation

          • Major - Major loss of function.
          • In Progress

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-1565 enhancements and new features for jpred predictions on profiles that include insertions

          • Major - Major loss of function.
          • Open

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2668 HMM visualisation and MSA analysis

          • Major - Major loss of function.
          • In Progress

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1379 JABA 2 Jpred client

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: