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  1. Jalview
  2. JAL-2907

Stockholm alignment column and sequence annotation should not use whitespace for gap

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    Details

    • Type: Bug
    • Status: Ready for testing
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: 2.10.3
    • Fix Version/s: 2.12.0
    • Component/s: file format issue
    • Labels:
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      Description

      Noticed while test hmmbuild on RF0031_folded.stk.
      It failed with a parse error for the line in the output Stockholm file for
      #=GR B.taurus.4/1-64 SS ......((( (((.... [etc]

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          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2629 HMMER Command Implementation

          • Major - Major loss of function.
          • In Progress

          New Feature - A new feature of the product, which has yet to be developed. JAL-1199 Output in Stockholm format

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated: