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  1. Jalview
  2. JAL-1812

Allow groovy scripts to run in headless and interactive mode with same Jalview.getAlignFrames()[] code

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.9, 2.9.0b1
    • Fix Version/s: 2.10.0
    • Component/s: Scriptable API
    • Labels:
      None

      Description


      Provide a flyweight implementation of getAlignframes() to allow normal groovy scripting when Jalview is run in headless mode.

      Jalview-discuss Thread: http://www.jalview.org/pipermail/jalview-discuss/2015-July/001212.html

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-381 groovy scripting for headless jalview operation

          • Major - Major loss of function.
          • Resolved

          New Feature - A new feature of the product, which has yet to be developed. JAL-2068 Support for pluggable alignment annotation worker

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. JAL-1846 CruiseControl applet build broken

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2217 Rationalise namespace for accessing Jalview functions from Groovy

          • Major - Major loss of function.
          • Open

          Task - A task that needs to be done. JAL-3031 Generalise Desktop.instance and Desktop.desktop for flexible window management

          • Major - Major loss of function.
          • In Progress

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1811 Initialise Desktop in headless mode execution

          • Major - Major loss of function.
          • Reopened

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Updated:
                Resolved: