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  1. Jalview
  2. JAL-2068

Support for pluggable alignment annotation worker

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: jvdesktop, Scriptable API
    • Labels:
      None

      Description

      Design and implement code to allow an external script to register a worker to compute alignment annotation.

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          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-2075 Tree by sequence feature similarity doesn't exclude features in hidden columns

          • Major - Major loss of function.
          • Closed
          related with

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-2217 Rationalise namespace for accessing Jalview functions from Groovy

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-2041 clinical significance field not preserved in variant annotation from Ensembl

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-3214 Groovy script for average Hydrophobicity score annotation

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Ready for testing

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2169 alignment worker recalculation triggers for other kinds of modifications on the alignment view

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1812 Allow groovy scripts to run in headless and interactive mode with same Jalview.getAlignFrames()[] code

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2228 annotation track counts for all displayed features on alignment

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: