Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-1811

Initialise Desktop in headless mode execution

    XMLWordPrintable

    Details

    • Type: Improvement
    • Status: Reopened
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 2.8.2b1
    • Fix Version/s: 2.12
    • Component/s: Command Line Interface
    • Labels:

      Description

      Presently, Desktop instance is not initialised when running Jalview in headless mode. Consequently, saving Trees & RNA can't be achieved in headless mode, likewise executing groovy scripts that require retrieving of multiple frames in headless mode.

        Attachments

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-764 tree passed via command line not written to jalview project when in headless mode

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1812 Allow groovy scripts to run in headless and interactive mode with same Jalview.getAlignFrames()[] code

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2910 HeadlessException in console in headless mode

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Task - A task that needs to be done. JAL-3031 Generalise Desktop.instance and Desktop.desktop for flexible window management

          • Major - Major loss of function.
          • In Progress

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Votes:
              0 Vote for this issue
              Watchers:
              4 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: