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JAL-3788
NPE in Overview colouring as ClustalX on New View with automatic Overview
Nested feature colouring in Overview doesn't match alignmentJAL-3397
Alternative to NCList for IntervalStore; improvements for FeatureStore
Include name of view in Overview window title
Overview window placed relative to parent alignframe
Focus on Overview should raise associated view
Exceptions and multiple overview redraws during interactive editingJAL-2614
Click-drag on view boundary in overview to resize visible view area
Visible view is relocated to centre on the clicked position on overview windowJAL-2612
Difficulties in locating specific regions of large alignments via the overview window
Click-drag of visible area to allow fine adjustment
resize old overview image on overview geometry change before redrawing
show sequence ID colours in overview window
Overview doesn't show non-gap positions in light grey for 'None' colourscheme
automatically adjust resolution for overview for hi-res displays
select and /or highlight selected region via overview window
Ctrl-click-drag on overview creates a new view of that area of the alignment
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id=\"searcher-component\" multiple=\"multiple\" name=\"component\" size=\"2\" aria-label=\"Search for components\">\n <optgroup label=\"\">\n <option value=\"-1\" title=\"No Component\">No Component</option>\n </optgroup>\n <optgroup label=\"\">\n <option value=\"id:analysis\" title=\"analysis\">analysis</option>\n <option value=\"id:annotation\" title=\"annotation\">annotation</option>\n <option value=\"id:awt-gui\" title=\"awt-gui\">awt-gui</option>\n <option value=\"id:Bamboo\" title=\"Bamboo\">Bamboo</option>\n <option value=\"id:Benchmarking\" title=\"Benchmarking\">Benchmarking</option>\n <option value=\"id:bioconda\" title=\"bioconda\">bioconda</option>\n <option value=\"id:bob\" title=\"bob\">bob</option>\n <option value=\"id:cds/protein\" title=\"cds/protein\">cds/protein</option>\n <option value=\"id:checkstyle\" title=\"checkstyle\">checkstyle</option>\n <option value=\"id:chimerax\" title=\"chimerax\">chimerax</option>\n <option value=\"id:colourschemes\" 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value=\"id:jalview-slivka\" title=\"jalview-slivka\">jalview-slivka</option>\n <option value=\"id:java11\" title=\"java11\">java11</option>\n <option value=\"id:java8\" title=\"java8\">java8</option>\n <option value=\"id:java9\" title=\"java9\">java9</option>\n <option value=\"id:jvdesktop\" title=\"jvdesktop\">jvdesktop</option>\n <option value=\"id:JVL-Ajax\" title=\"JVL-Ajax\">JVL-Ajax</option>\n <option value=\"id:jvlite\" title=\"jvlite\">jvlite</option>\n <option value=\"id:JWS-GUI\" title=\"JWS-GUI\">JWS-GUI</option>\n <option value=\"id:JWS1\" title=\"JWS1\">JWS1</option>\n <option value=\"id:JWS2\" title=\"JWS2\">JWS2</option>\n <option value=\"id:launcher\" title=\"launcher\">launcher</option>\n <option value=\"id:localexecution\" title=\"localexecution\">localexecution</option>\n <option value=\"id:logging\" title=\"logging\">logging</option>\n <option value=\"id:na\" title=\"na\">na</option>\n <option value=\"id:openjdk\" title=\"openjdk\">openjdk</option>\n <option value=\"id:OSX-App\" title=\"OSX-App\">OSX-App</option>\n <option selected=\"selected\" value=\"id:overview\" title=\"overview\">overview</option>\n <option value=\"id:PAE\" title=\"PAE\">PAE</option>\n <option value=\"id:pdbe\" title=\"pdbe\">pdbe</option>\n <option value=\"id:printing and export\" title=\"printing and export\">printing and export</option>\n <option value=\"id:Properties and Preferences\" title=\"Properties and Preferences\">Properties and Preferences</option>\n <option value=\"id:provenance\" title=\"provenance\">provenance</option>\n <option value=\"id:Release-process\" title=\"Release-process\">Release-process</option>\n <option value=\"id:renderer\" title=\"renderer\">renderer</option>\n <option value=\"id:REST-API\" title=\"REST-API\">REST-API</option>\n <option value=\"id:Scriptable API\" title=\"Scriptable API\">Scriptable API</option>\n <option value=\"id:selection\" title=\"selection\">selection</option>\n <option value=\"id:sequencefeatures\" title=\"sequencefeatures\">sequencefeatures</option>\n <option value=\"id:server event\" title=\"server event\">server event</option>\n <option value=\"id:slivka\" title=\"slivka\">slivka</option>\n <option value=\"id:Structures\" title=\"Structures\">Structures</option>\n <option value=\"id:Test suite\" title=\"Test suite\">Test suite</option>\n <option value=\"id:training\" title=\"training\">training</option>\n <option value=\"id:Translations\" title=\"Translations\">Translations</option>\n <option value=\"id:trees\" title=\"trees\">trees</option>\n <option value=\"id:urllinks\" title=\"urllinks\">urllinks</option>\n <option value=\"id:usernews\" title=\"usernews\">usernews</option>\n <option value=\"id:uxstudy\" title=\"uxstudy\">uxstudy</option>\n <option value=\"id:vamsas\" title=\"vamsas\">vamsas</option>\n <option value=\"id:variants\" title=\"variants\">variants</option>\n <option value=\"id:varna\" title=\"varna\">varna</option>\n <option value=\"id:web service bug\" title=\"web service bug\">web service bug</option>\n <option value=\"id:web service request\" title=\"web service request\">web service request</option>\n <option value=\"id:website\" title=\"website\">website</option>\n <option value=\"id:Webstart\" title=\"Webstart\">Webstart</option>\n <option value=\"id:Window Geom\" title=\"Window Geom\">Window Geom</option>\n </optgroup>\n </select>\n </div>\n ","jql":"component = overview","validSearcher":true,"isShown":true},"project":{"name":"Project","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldpid\">Project:</label><span id=\"fieldpid\" class=\"fieldValue\">\n \n <a href=\"/browse/JAL\" title=\"Browse Jalview project\">Jalview</a> </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-project\" >\n <label for=\"searcher-pid\">Project</label>\n \n\n <select class=\"select js-default-checkboxmultiselect\" data-placeholder-text=\"Find Projects...\" id=\"searcher-pid\" multiple=\"multiple\" name=\"pid\" size=\"5\">\n <optgroup label=\"All Projects\">\n \n <option data-icon=\"/secure/projectavatar?pid=10020&size=small\"\n title=\"JABAWS\"\n value=\"10020\">\n JABAWS (JWS)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10010&size=small\"\n selected=\"selected\" title=\"Jalview\"\n value=\"10010\">\n Jalview (JAL)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10030&size=small\"\n title=\"JPred\"\n value=\"10030\">\n JPred (JPRED)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10130&size=small\"\n title=\"ProteoCache\"\n value=\"10130\">\n ProteoCache (PROT)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10230&size=small\"\n title=\"The jalview.org websites \"\n value=\"10230\">\n The jalview.org websites (JVO)\n </option>\n </optgroup>\n </select>\n </div>\n \n","jql":"project = JAL","validSearcher":true,"isShown":true},"assignee":{"name":"Assignee","editHtml":"\n \n <div class=\"field-group 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was once resolved, but the resolution was deemed incorrect. From here issues are either marked assigned or resolved.","iconUrl":"/images/icons/statuses/reopened.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Reopened</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/resolved.png\" value=\"5\" title=\"Resolved\" data-simple-status=\"{"id":"5","name":"Resolved","description":"A resolution has been taken, and it is awaiting verification by reporter. From here issues are either reopened, or are closed.","iconUrl":"/images/icons/statuses/resolved.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Resolved</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"6\" title=\"Closed\" data-simple-status=\"{"id":"6","name":"Closed","description":"The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.","iconUrl":"/images/icons/statuses/closed.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Closed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10000\" title=\"Being documented\" data-simple-status=\"{"id":"10000","name":"Being documented","description":"Feature implementation is complete and passed alpha-testing, and now ready for documentation.","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Being documented</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10002\" title=\"Ready for testing\" data-simple-status=\"{"id":"10002","name":"Ready for testing","description":"Feature is ready for testing by non-developers","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Ready for testing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10003\" title=\"Being tested\" data-simple-status=\"{"id":"10003","name":"Being tested","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Being tested</option>\n </select>\n </div>\n \n","validSearcher":true,"isShown":true}}}
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