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  1. Jalview
  2. JAL-851

sequence database accessions not imported when fetching alignments from Rfam

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Critical
    • Resolution: Incomplete
    • Affects Version/s: 2.5.1_rna, 2.8, 2.8.0b1, 2.8.1
    • Fix Version/s: 2.7_gsoc11, 2.8.0b1, 2.8.1
    • Component/s: file format issue, na
    • Labels:
      None

      Description

      Rfam stockholm files retrieved using the web site using the 'Species label' download option [should] include database accessions that Jalview can then use to retrieve further annotation for each sequence (e.g. from DAS annotation servers).

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          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1597 more efficient resolution of IDs when querying contig databases

          • Major - Major loss of function.
          • Open
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1265 import and export database cross references via Stockholm format

          • Blocker - Blocks development and/or testing work, production could not run.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-886 fetching EMBL reference for an RNA sequence results fails with a sequence mismatch

          • Major - Major loss of function.
          • In Progress

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: