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  1. Jalview
  2. JAL-734

Visualise alignments and superposed protein-protein interface structures associated with homologous family pairs

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    Details

    • Type: Epic
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.7, 2.8, 2.9
    • Fix Version/s: None
    • Component/s: awt-gui, gui, gui design issue, Structures
    • Labels:
      None
    • Epic Name:
      Molecular Interfaces

      Description

      Jalview could be very useful for users interested in protein-protein interfaces if it were able to easily display alignment(s) and superpositions of interacting structures/domains. The current multiple alignment/multiple structure linked display is not sufficient for this, since at least two alignments must be associated with a single multiple structure superposition.

      There are a number of specific use cases associated with this - see associated user stories.

        Attachments

          Issue Links

          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-235 Select many PDB files at once when doing 'Associate PDB file with sequence'

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-236 automatic association of pdb file(s) with sequence(s) in algnment

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-833 view scroll event generation and handlers

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-733 enable Jmol displays to be associated with multiple multiple alignments

          • Major - Major loss of function.
          • Resolved

          New Feature - A new feature of the product, which has yet to be developed. JAL-469 select sequence/alignment regions from javascript

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: