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  1. Jalview
  2. JAL-733

enable Jmol displays to be associated with multiple multiple alignments

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    Details

    • Type: New Feature
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.6.1
    • Fix Version/s: 2.7
    • Component/s: Structures
    • Labels:

      Description

      It is sometimes useful to allow many distinct alignments to be associated with a multiple structure alignment - usually when multiple fragments have been aligned independently (e.g. distinct alignments for either side of a protein-protein interaction surface), but also when multiple alternate sequence alignments are being inspected in the light of available structural data.

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          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-734 Visualise alignments and superposed protein-protein interface structures associated with homologous family pairs

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-766 two or more chains in a single PDB file associated with sequences in different alignments do not get coloured by their associated sequence

          • Major - Major loss of function.
          • Resolved

          Task - A task that needs to be done. JAL-862 new example to demonstrate jalviewLite and Jmol javascript message exchange

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-777 extend jmol superposition menu with options to specify which alignments to use to superpose

          • Major - Major loss of function.
          • Resolved
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-868 structure colours not updated when tree partition changed in alignment

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-641 view/alignment association menu to enable user to easily specify which alignment a multi-structure view takes its colours/correspondences from

          • Major - Major loss of function.
          • Resolved

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: