Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-236

automatic association of pdb file(s) with sequence(s) in algnment

    XMLWordPrintable

    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Feature Request
    • Labels:
      None
    • Mantis ID:
      16615

      Description

      For a given set of selected (or the whole alignment's) sequences, it'd be very cool to have jalview try to align each structure to each sequence - and so pick the best association for each structure on the alignment.

        Attachments

          Issue Links

          blocks

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-734 Visualise alignments and superposed protein-protein interface structures associated with homologous family pairs

          • Critical - Crashes, loss of data, severe memory leak.
          • Open
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-235 Select many PDB files at once when doing 'Associate PDB file with sequence'

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-800 pdb file URL parameter enabling applet to automatically obtain PDB file for a specific sequence ID

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-801 URL or file path for Jalview to search for PDB files related to currently displayed alignment

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              Unassigned Unassigned
              Reporter:
              jprocter James Procter
              Votes:
              0 Vote for this issue
              Watchers:
              0 Start watching this issue

                Dates

                Created:
                Updated: