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  1. Jalview
  2. JAL-728

use different substitution matrices in the alignment quality calculation and shading

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      Description

      Blosum62 is not always the most appropriate substution matrix to use when evaluating alignment quality. It would be useful to be able to choose which substitution matrix (from a list or even provide your own) is used to calculate alignment quality.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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