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  1. Jalview
  2. JAL-2416

Load score matrices from file or resource file

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.1
    • Fix Version/s: 2.10.2
    • Component/s: jvdesktop, jvlite
    • Labels:
      None

      Description

      Load/parse BLOSUM62, PAM250, DNA score matrices from resource files rather than hard-coding in ResidueProperties.
      Reuse the parser to allow drag and drop and/or menu option to load user score models.

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-2393 Custom substitution matrices provided via groovy script

          • Major - Major loss of function.
          • In Progress

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2476 Import of files other than alignment files by Desktop->Import-> or drag'n'drop

          • Major - Major loss of function.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2423 incorrect title in output window when exporting tree calculated in Jalview

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-789 allow the alignment parameters and score matrix to be set for a pairwise sequence alignment

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-728 use different substitution matrices in the alignment quality calculation and shading

          • Major - Major loss of function.
          • In Progress

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: