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  1. Jalview
  2. JAL-659

update DAS capabilites in line with DAS 1.6 client spec

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    Details

    • Type: Epic
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.6, 2.8, 3.0
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None

      Description

      The DAS 1.6 spec was released in June 2010: http://www.biodas.org/wiki/DAS1.6
      It includes a number of extensions to the registry, the URL form allowed by servers, and the DAS annotation and sequence feature datamodel.

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          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-191 better control of feature group display and add user-definable feature grouping to GUI

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-972 replace dasobert with JDAS

          • Major - Major loss of function.
          • Resolved
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-657 sequence fetcher replaces ',' for ';' when the ',' is part of a valid accession ID

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-1063 DAS sequence fetchers listed in GUI not updated if the DAS registry URL is changed

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-1015 Export of DAS/database information presented in tooltip for sequences in a multiple sequence alignment.

          • Major - Major loss of function.
          • Resolved

          Task - A task that needs to be done. JAL-1064 refactor sequence fetcher/database name registry to support canonical database names for multiple sequence and alignment data sources

          • Major - Major loss of function.
          • Resolved

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: