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  1. Jalview
  2. JAL-583

visualization of multiple structure superpositions based on visible alignment

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    Details

    • Type: Epic
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.6
    • Component/s: Structures
    • Labels:
      None
    • Epic Name:
      Structure Superpositions

      Description

      Jmol 12 allows superposition of multiple structures based on picked atoms. Jmol/jalview interface to be extended to enable the structures in the alignment to be visualized as a single superposed set of structures.

        Attachments

          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-628 colour by chain not useful when multiple structures are displayed

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-627 colour by model

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open
          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-582 update Jmol to 2010 series (12.XX)

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-634 store multiple structure views in Jalview projects

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-635 visual delay when additional structures are being retrieved prior to being added to an existing view

          • Major - Major loss of function.
          • Resolved
          duplicates

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-434 linked view of aligned structures and aligned sequences

          • Major - Major loss of function.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-846 cannot view associated structure for uniprot sequence

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1266 extract RMSDs from Jmol superposition of alignment

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: