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  1. Jalview
  2. JAL-582

update Jmol to 2010 series (12.XX)

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    Details

    • Type: Improvement
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.6
    • Component/s: None
    • Labels:
      None

      Description

      Update the old Jmol bindings to the latest 2010 standard. See related issues for specific features that this new version allows jalview to be enhanced with.

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          Issue Links

          blocks

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-583 visualization of multiple structure superpositions based on visible alignment

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-592 hover tooltip and mouseover of position on structure not sent from Jmol in applet

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-569 enable jalviewLite to automatically associate sequences in an alignment to structures in an existing Jmol instance

          • Major - Major loss of function.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-584 share selections between Jmol and associated Alignment view

          • Major - Major loss of function.
          • In Progress
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-620 Jmol 12.0.6 property permission exception when opening a pdb file

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-619 jalviewLite does not launch if jmol jar is not on classpath

          • Major - Major loss of function.
          • Closed
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-638 jmol 12.0 console appears independent of the Jmol it controls

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-623 pdb structure imported from paste to alignment not loaded into new Jmol window

          • Blocker - Blocks development and/or testing work, production could not run.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: