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  1. Jalview
  2. JAL-569

enable jalviewLite to automatically associate sequences in an alignment to structures in an existing Jmol instance

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
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      Description

      An example application is here:
      http://10.21.0.54/~Kersten/Kt7site_withJalView.html

      Ideally, Jalview is given a reference to an existing Jmol instance, and it matches up structures in that instance with the alignment sequences (along with any hints from PDBfile parameters) so the existing Jmol becomes linked to the alignment view.

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          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-621 javascript structure viewer harness to pass messages between Jmol and Jalview when running as distinct applets

          • Major - Major loss of function.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-582 update Jmol to 2010 series (12.XX)

          • Major - Major loss of function.
          • Resolved

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: