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  1. Jalview
  2. JAL-521

support IUPAC nucleotide ambiguity codes

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: na
    • Labels:
      None
    • Mantis ID:
      62620

      Description

      Full IUPAC ambiguity code support would allow:
       - easy searching
       - a more widely recognised nucleotide consensus line
       - better interoperation with other programs that do nucleotide sequence analysis

      See this thread:
      http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2008-January/000038.html

        Attachments

          Issue Links

          blocks

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. JAL-390 basic DNA, RNA (or general nucleic acid sequence) manipulation tools

          • Major - Major loss of function.
          • Open
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-711 Consensus line should use IUB codes

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              Unassigned Unassigned
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: